Variant report

Variant	rs61901378
Chromosome Location	chr11:120577241-120577242
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:120576655..120578167-chr11:120777548..120780496,2	MCF-7	breast:

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10892616	1.00[ASN][1000 genomes]
rs12270261	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12272864	0.94[EUR][1000 genomes]
rs12273984	0.81[EUR][1000 genomes]
rs12278795	0.95[EUR][1000 genomes]
rs12280296	0.95[EUR][1000 genomes]
rs12281001	1.00[ASN][1000 genomes]
rs12281008	1.00[ASN][1000 genomes]
rs12283240	1.00[ASN][1000 genomes]
rs12284730	1.00[ASN][1000 genomes]
rs12287882	1.00[ASN][1000 genomes]
rs12288261	0.95[EUR][1000 genomes]
rs12291927	0.95[EUR][1000 genomes]
rs12292552	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12293393	0.95[EUR][1000 genomes]
rs12293509	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12294046	1.00[ASN][1000 genomes]
rs12295113	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12295200	0.94[EUR][1000 genomes]
rs2846107	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2846108	0.93[EUR][1000 genomes]
rs2846109	0.84[EUR][1000 genomes]
rs61901360	0.95[EUR][1000 genomes]
rs61901361	0.95[EUR][1000 genomes]
rs61901362	0.86[EUR][1000 genomes]
rs61901363	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61901364	0.95[EUR][1000 genomes]
rs61901366	0.95[EUR][1000 genomes]
rs61901367	0.95[EUR][1000 genomes]
rs61901368	0.84[EUR][1000 genomes]
rs61901369	0.95[EUR][1000 genomes]
rs61901370	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61901371	0.94[EUR][1000 genomes]
rs61901372	0.94[EUR][1000 genomes]
rs61901373	0.94[EUR][1000 genomes]
rs61901374	0.94[EUR][1000 genomes]
rs61901375	0.94[EUR][1000 genomes]
rs61901376	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61901377	0.95[EUR][1000 genomes]
rs61901382	0.84[EUR][1000 genomes]
rs61901398	0.93[EUR][1000 genomes]
rs61901399	0.93[EUR][1000 genomes]
rs61902683	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs61902686	0.94[EUR][1000 genomes]
rs61902687	0.94[EUR][1000 genomes]
rs61902689	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6589834	0.82[EUR][1000 genomes]
rs7102869	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7944756	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054407	chr11:120535570-120630114	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1053607	chr11:120540795-120802006	Enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv3693392	chr11:120549745-120628012	Enhancers Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120568000-120580600	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr11:120570000-120581600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr11:120570200-120577400	Weak transcription	Fetal Lung	lung
4	chr11:120575200-120577800	Weak transcription	Ovary	ovary
5	chr11:120576200-120578000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr11:120577000-120578600	ZNF genes & repeats	Pancreas	Pancrea
7	chr11:120577200-120577800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr11:120577200-120578000	ZNF genes & repeats	Spleen	Spleen

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