Variant report

Variant	rs61901363
Chromosome Location	chr11:120569866-120569867
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10892616	1.00[ASN][1000 genomes]
rs12270261	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12272864	0.97[EUR][1000 genomes]
rs12273984	0.84[EUR][1000 genomes]
rs12278795	0.98[EUR][1000 genomes]
rs12280296	0.98[EUR][1000 genomes]
rs12281001	1.00[ASN][1000 genomes]
rs12281008	1.00[ASN][1000 genomes]
rs12283240	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12284730	1.00[ASN][1000 genomes]
rs12287882	1.00[ASN][1000 genomes]
rs12288261	0.98[EUR][1000 genomes]
rs12291927	0.98[EUR][1000 genomes]
rs12292552	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12293393	0.98[EUR][1000 genomes]
rs12293509	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12294046	1.00[ASN][1000 genomes]
rs12295113	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12295200	0.97[EUR][1000 genomes]
rs2846107	0.90[EUR][1000 genomes]
rs2846108	0.90[EUR][1000 genomes]
rs2846109	0.82[EUR][1000 genomes]
rs61901360	0.98[EUR][1000 genomes]
rs61901361	0.98[EUR][1000 genomes]
rs61901362	0.88[EUR][1000 genomes]
rs61901364	0.98[EUR][1000 genomes]
rs61901366	0.98[EUR][1000 genomes]
rs61901367	0.98[EUR][1000 genomes]
rs61901368	0.87[EUR][1000 genomes]
rs61901369	0.98[EUR][1000 genomes]
rs61901370	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61901371	0.97[EUR][1000 genomes]
rs61901372	0.97[EUR][1000 genomes]
rs61901373	0.97[EUR][1000 genomes]
rs61901374	0.97[EUR][1000 genomes]
rs61901375	0.97[EUR][1000 genomes]
rs61901376	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61901377	0.98[EUR][1000 genomes]
rs61901378	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61901382	0.82[EUR][1000 genomes]
rs61901398	0.90[EUR][1000 genomes]
rs61901399	0.90[EUR][1000 genomes]
rs61902683	1.00[ASN][1000 genomes]
rs61902686	0.97[EUR][1000 genomes]
rs61902687	0.97[EUR][1000 genomes]
rs61902689	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7102869	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7944756	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054407	chr11:120535570-120630114	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1053607	chr11:120540795-120802006	Enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv3693392	chr11:120549745-120628012	Enhancers Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120567200-120570400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:120568000-120580600	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr11:120569600-120570400	Weak transcription	Spleen	Spleen
4	chr11:120569800-120570000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell

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