Variant report

Variant	rs4454331
Chromosome Location	chr9:103364313-103364314
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:103364204..103366504-chr9:103372909..103374842,2	K562	blood:
2	chr9:103364267..103365117-chr9:103452471..103453401,2	MCF-7	breast:
3	chr9:103363089..103366004-chr9:103369359..103371532,2	K562	blood:
4	chr9:103364305..103365019-chr9:104073743..104074587,4	MCF-7	breast:
5	chr9:103364235..103365012-chr9:104074061..104074764,2	MCF-7	breast:
6	chr9:103362495..103364857-chr9:103444927..103447653,2	MCF-7	breast:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10819795	0.93[ASN][1000 genomes]
rs10989111	0.82[CHB][hapmap]
rs10989146	0.81[CEU][hapmap]
rs10989152	0.84[JPT][hapmap]
rs10989153	0.83[JPT][hapmap];0.81[EUR][1000 genomes]
rs10989154	0.83[JPT][hapmap]
rs10989156	0.85[JPT][hapmap]
rs10989161	1.00[CHB][hapmap];0.92[JPT][hapmap];0.95[ASN][1000 genomes]
rs10989162	1.00[CHB][hapmap];0.92[JPT][hapmap];0.95[ASN][1000 genomes]
rs10989163	1.00[CHB][hapmap];0.91[JPT][hapmap];0.95[ASN][1000 genomes]
rs10989164	1.00[CHB][hapmap];0.91[JPT][hapmap];0.95[ASN][1000 genomes]
rs10989165	1.00[CHB][hapmap];0.92[JPT][hapmap];0.95[ASN][1000 genomes]
rs10989167	1.00[CHB][hapmap];0.91[JPT][hapmap];0.97[ASN][1000 genomes]
rs10989169	1.00[CHB][hapmap];0.91[JPT][hapmap];0.97[ASN][1000 genomes]
rs10989170	1.00[CEU][hapmap];0.94[CHB][hapmap];0.91[JPT][hapmap];0.84[YRI][hapmap];0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10989173	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10989174	0.94[ASN][1000 genomes]
rs12235981	0.84[JPT][hapmap]
rs12236970	0.83[JPT][hapmap];0.81[EUR][1000 genomes]
rs12683889	1.00[CHB][hapmap];0.91[JPT][hapmap];0.95[ASN][1000 genomes]
rs12685564	0.92[ASN][1000 genomes]
rs13291670	0.86[YRI][hapmap]
rs16919204	1.00[CHB][hapmap];0.92[JPT][hapmap];0.93[ASN][1000 genomes]
rs16919211	1.00[CHB][hapmap];0.92[JPT][hapmap];0.93[ASN][1000 genomes]
rs1931140	0.85[JPT][hapmap];0.81[EUR][1000 genomes]
rs28623148	0.95[ASN][1000 genomes]
rs35919153	0.84[EUR][1000 genomes]
rs55757829	0.93[ASN][1000 genomes]
rs56290508	0.93[ASN][1000 genomes]
rs56354846	0.93[ASN][1000 genomes]
rs7021028	0.83[JPT][hapmap];0.81[EUR][1000 genomes]
rs72735197	0.90[ASN][1000 genomes]
rs7850353	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893623	chr9:102648036-103405197	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv893624	chr9:103351931-103416553	Enhancers Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:103361200-103372800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr9:103361600-103364400	Enhancers	Fetal Muscle Leg	muscle
3	chr9:103361800-103364600	Weak transcription	Fetal Brain Male	brain
4	chr9:103361800-103364600	Weak transcription	Right Atrium	heart
5	chr9:103361800-103364800	Weak transcription	Brain Anterior Caudate	brain
6	chr9:103361800-103364800	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr9:103361800-103367600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr9:103362000-103364600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr9:103362200-103364600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr9:103363200-103365200	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr9:103363400-103364400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr9:103363400-103364800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr9:103363600-103364600	Enhancers	H1 Cell Line	embryonic stem cell
14	chr9:103363600-103364800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr9:103363600-103365200	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr9:103363800-103365200	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr9:103363800-103365200	Enhancers	iPS-15b Cell Line	embryonic stem cell
18	chr9:103364000-103365000	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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