Variant report

Variant	rs72735197
Chromosome Location	chr9:103369189-103369190
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10819795	0.97[ASN][1000 genomes]
rs10989161	0.85[ASN][1000 genomes]
rs10989162	0.85[ASN][1000 genomes]
rs10989163	0.85[ASN][1000 genomes]
rs10989164	0.85[ASN][1000 genomes]
rs10989165	0.85[ASN][1000 genomes]
rs10989167	0.87[ASN][1000 genomes]
rs10989169	0.87[ASN][1000 genomes]
rs10989170	0.87[ASN][1000 genomes]
rs10989173	0.90[ASN][1000 genomes]
rs10989174	0.96[ASN][1000 genomes]
rs12683889	0.85[ASN][1000 genomes]
rs12685564	0.82[ASN][1000 genomes]
rs16919204	0.83[ASN][1000 genomes]
rs16919211	0.83[ASN][1000 genomes]
rs28623148	0.85[ASN][1000 genomes]
rs4454331	0.90[ASN][1000 genomes]
rs55757829	0.83[ASN][1000 genomes]
rs56290508	0.83[ASN][1000 genomes]
rs56354846	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893623	chr9:102648036-103405197	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv893624	chr9:103351931-103416553	Enhancers Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:103361200-103372800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr9:103365400-103382200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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