Variant report

Variant	rs4457168
Chromosome Location	chr6:150850188-150850189
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:150847959..150850613-chr6:150920501..150922911,2	K562	blood:

Variant related genes	Relation type
ENSG00000232891	Chromatin interaction
ENSG00000120278	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12190552	0.81[AMR][1000 genomes]
rs12195563	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12196745	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12197420	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12205882	0.81[AMR][1000 genomes]
rs12210903	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13208542	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13213713	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4321833	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4321834	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4467791	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4580880	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020067	chr6:150730783-150870708	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv886772	chr6:150743364-151024280	Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv464079	chr6:150836676-150873766	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv604850	chr6:150836676-150873766	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150847800-150850800	Enhancers	Colon Smooth Muscle	Colon
2	chr6:150848200-150850600	Enhancers	Stomach Smooth Muscle	stomach
3	chr6:150848600-150850600	Enhancers	Rectal Smooth Muscle	rectum
4	chr6:150848600-150851000	Enhancers	Placenta	Placenta
5	chr6:150849000-150850400	Enhancers	Primary B cells from cord blood	blood
6	chr6:150849400-150850200	Enhancers	Fetal Muscle Leg	muscle
7	chr6:150849400-150850200	Enhancers	Fetal Thymus	thymus
8	chr6:150849400-150850400	Enhancers	Primary B cells from peripheral blood	blood
9	chr6:150849400-150850600	Enhancers	Fetal Stomach	stomach
10	chr6:150849600-150850600	Enhancers	Fetal Kidney	kidney
11	chr6:150849600-150850800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr6:150849800-150850200	Enhancers	Adipose Nuclei	Adipose
13	chr6:150849800-150850200	Enhancers	Pancreas	Pancrea
14	chr6:150849800-150850400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr6:150849800-150850400	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr6:150849800-150850400	Enhancers	Duodenum Smooth Muscle	Duodenum
17	chr6:150849800-150850600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr6:150849800-150851400	Enhancers	Placenta Amnion	Placenta Amnion
19	chr6:150850000-150850400	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr6:150850000-150850400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr6:150850000-150850400	Enhancers	HUES48 Cell Line	embryonic stem cell
22	chr6:150850000-150850400	Enhancers	HUES6 Cell Line	embryonic stem cell
23	chr6:150850000-150850400	Enhancers	Fetal Heart	heart
24	chr6:150850000-150850600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr6:150850000-150850600	Enhancers	iPS-18 Cell Line	embryonic stem cell
26	chr6:150850000-150850600	Enhancers	iPS-20b Cell Line	embryonic stem cell
27	chr6:150850000-150850600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
28	chr6:150850000-150850600	Enhancers	Fetal Lung	lung

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