Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:150812964..150816383-chr6:150817541..150822095,5	K562	blood:

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs12190552	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12195563	0.81[AMR][1000 genomes]
rs12196745	0.81[AMR][1000 genomes]
rs12197420	0.81[AMR][1000 genomes]
rs12210903	0.81[AMR][1000 genomes]
rs13193322	0.93[AFR][1000 genomes]
rs13196518	0.93[AFR][1000 genomes]
rs13206793	0.93[AFR][1000 genomes]
rs13208542	1.00[JPT][hapmap];0.81[AMR][1000 genomes]
rs13218019	0.83[AFR][1000 genomes]
rs17079805	0.93[AFR][1000 genomes]
rs33951563	0.83[AFR][1000 genomes]
rs34537150	0.84[AFR][1000 genomes]
rs34782866	0.91[AFR][1000 genomes]
rs4321833	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4321834	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4323319	0.82[YRI][hapmap];0.83[AFR][1000 genomes]
rs4457168	0.81[AMR][1000 genomes]
rs4467791	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4566894	0.81[AFR][1000 genomes]
rs6924786	0.93[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020067	chr6:150730783-150870708	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv886772	chr6:150743364-151024280	Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150817400-150820800	Weak transcription	Small Intestine	intestine

Quick Search: