Variant report

Variant	rs4566894
Chromosome Location	chr6:150836135-150836136
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:12)
CpG islands
(count:0)
Chromatin interactive
region (count:3)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:12 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA3	chr6:150836091-150836375	T-47D	breast:	n/a	n/a
2	CEBPB	chr6:150836057-150836560	MCF-7	breast:	n/a	n/a
3	ZNF217	chr6:150836037-150836523	MCF-7	breast:	n/a	n/a
4	GATA3	chr6:150836035-150836610	MCF-7	breast:	n/a	chr6:150836427-150836436
5	TCF7L2	chr6:150836053-150837000	HEK293	kidney:	n/a	n/a
6	KAP1	chr6:150836110-150837128	U2OS	brain:	n/a	n/a
7	HDAC2	chr6:150836077-150836551	MCF-7	breast:	n/a	n/a
8	SIN3AK20	chr6:150835899-150836654	MCF-7	breast:	n/a	n/a
9	CTCF	chr6:150836100-150836250	SAEC	small airway:	n/a	n/a
10	TCF7L2	chr6:150836051-150836633	MCF-7	breast:	n/a	n/a
11	NR2F2	chr6:150836047-150836622	MCF-7	breast:	n/a	n/a
12	CEBPB	chr6:150836053-150836490	MCF-7	breast:	n/a	n/a

No data

(count:3 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:150830743..150834012-chr6:150835042..150837409,4	K562	blood:
2	chr6:150835775..150838453-chr6:150841014..150842645,2	K562	blood:
3	chr6:150835896..150838702-chr6:150854889..150856398,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000219622	TF binding region
ENSG00000219622	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10499263	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10499264	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11964142	0.88[EUR][1000 genomes]
rs12190552	0.82[AFR][1000 genomes]
rs12205882	0.81[AFR][1000 genomes]
rs13193322	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13196518	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13197203	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13199757	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13206793	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13217733	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13218019	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17079805	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17079835	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs17079846	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17079852	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17079861	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs33951563	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34120777	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34219471	0.88[EUR][1000 genomes]
rs34393000	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34537150	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34597508	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34713924	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34779574	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34782866	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35046394	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35260192	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4323319	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55673001	0.86[EUR][1000 genomes]
rs55708277	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs59435275	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs67925488	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6924786	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73002876	0.89[EUR][1000 genomes]
rs7774671	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9384545	0.88[EUR][1000 genomes]
rs9688466	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020067	chr6:150730783-150870708	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv886772	chr6:150743364-151024280	Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150835800-150836800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr6:150836000-150836600	Enhancers	Fetal Lung	lung
3	chr6:150836000-150837000	Enhancers	Fetal Kidney	kidney

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