Variant report

Variant	rs13197203
Chromosome Location	chr6:150864222-150864223
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:150863886..150866190-chr6:150885198..150886787,2	K562	blood:
2	chr6:150863000..150865080-chr6:150869202..150870709,2	K562	blood:
3	chr6:150861044..150862970-chr6:150863595..150866527,2	MCF-7	breast:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10499263	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10499264	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11964142	0.87[EUR][1000 genomes]
rs13193322	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13196518	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13199757	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13206793	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13217733	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13218019	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17079805	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17079835	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17079846	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17079852	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17079861	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs33951563	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34120777	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34219471	0.87[EUR][1000 genomes]
rs34393000	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34537150	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34597508	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34713924	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34779574	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34782866	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35046394	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35260192	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4323319	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4566894	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55673001	0.86[EUR][1000 genomes]
rs55708277	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs59435275	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs67925488	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6924786	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73002876	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7774671	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9384545	0.87[EUR][1000 genomes]
rs9688466	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020067	chr6:150730783-150870708	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv886772	chr6:150743364-151024280	Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv464079	chr6:150836676-150873766	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv604850	chr6:150836676-150873766	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150859000-150865400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:150859400-150867400	Weak transcription	Fetal Kidney	kidney
3	chr6:150862400-150864400	Enhancers	HepG2	liver
4	chr6:150863000-150867400	Weak transcription	Right Atrium	heart
5	chr6:150863000-150867600	Weak transcription	Lung	lung
6	chr6:150863400-150867000	Weak transcription	Fetal Heart	heart
7	chr6:150863600-150867600	Weak transcription	Fetal Stomach	stomach
8	chr6:150864000-150865000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr6:150864000-150867600	Weak transcription	Liver	Liver
10	chr6:150864200-150867400	Weak transcription	Fetal Muscle Leg	muscle
11	chr6:150864200-150868400	Weak transcription	Fetal Lung	lung

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