Variant report

Variant	rs34120777
Chromosome Location	chr6:150882155-150882156
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:150880457..150883205-chr6:150884009..150886228,2	K562	blood:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10499263	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10499264	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11964142	0.85[EUR][1000 genomes]
rs12664749	0.83[ASN][1000 genomes]
rs13193322	0.86[EUR][1000 genomes]
rs13196518	0.86[EUR][1000 genomes]
rs13197203	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13199757	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13206793	0.86[EUR][1000 genomes]
rs13217733	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13218019	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17079805	0.86[EUR][1000 genomes]
rs17079835	0.80[EUR][1000 genomes]
rs17079846	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17079852	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17079861	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs33951563	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34219471	0.85[EUR][1000 genomes]
rs34393000	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34537150	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34597508	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34713924	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34779574	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34782866	0.86[EUR][1000 genomes]
rs35046394	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35260192	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4323319	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4566894	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs55673001	0.84[EUR][1000 genomes]
rs55708277	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59435275	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs67925488	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6924786	0.86[EUR][1000 genomes]
rs73002876	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7774671	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9384545	0.85[EUR][1000 genomes]
rs9688466	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886772	chr6:150743364-151024280	Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150881000-150882800	Enhancers	HMEC	breast
2	chr6:150881000-150883200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:150881200-150882400	Enhancers	K562	blood

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