Variant report

Variant	rs34393000
Chromosome Location	chr6:150868934-150868935
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10499263	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10499264	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11964142	0.86[EUR][1000 genomes]
rs13193322	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13196518	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13197203	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13199757	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13206793	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13217733	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13218019	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17079805	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17079835	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17079846	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17079852	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17079861	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs33951563	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34120777	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34219471	0.86[EUR][1000 genomes]
rs34537150	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34597508	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34713924	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34779574	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34782866	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35046394	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35260192	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4323319	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4566894	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs55673001	0.85[EUR][1000 genomes]
rs55708277	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs59435275	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs67925488	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6924786	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73002876	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7774671	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9384545	0.86[EUR][1000 genomes]
rs9688466	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020067	chr6:150730783-150870708	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv886772	chr6:150743364-151024280	Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv464079	chr6:150836676-150873766	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv604850	chr6:150836676-150873766	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv522578	chr6:150868443-150873766	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150866200-150871000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:150867000-150869000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr6:150867000-150869200	Enhancers	Fetal Heart	heart
4	chr6:150867400-150869000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr6:150867400-150869000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr6:150867400-150869000	Enhancers	Brain Substantia Nigra	brain
7	chr6:150867400-150869200	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr6:150867400-150869200	Enhancers	Right Atrium	heart
9	chr6:150867400-150869400	Enhancers	Fetal Muscle Leg	muscle
10	chr6:150867400-150869400	Enhancers	Right Ventricle	heart
11	chr6:150867400-150869800	Enhancers	Fetal Kidney	kidney
12	chr6:150867600-150869000	Enhancers	Brain Anterior Caudate	brain
13	chr6:150867600-150869000	Enhancers	Brain Germinal Matrix	brain
14	chr6:150867600-150869000	Enhancers	Fetal Muscle Trunk	muscle
15	chr6:150867600-150869000	Enhancers	Fetal Stomach	stomach
16	chr6:150867600-150869000	Enhancers	Skeletal Muscle Male	skeletal muscle
17	chr6:150867600-150869400	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
18	chr6:150867600-150869600	Enhancers	Liver	Liver
19	chr6:150867600-150869600	Enhancers	Ovary	ovary
20	chr6:150867800-150869000	Enhancers	Left Ventricle	heart
21	chr6:150867800-150869200	Enhancers	Placenta	Placenta
22	chr6:150867800-150869400	Enhancers	Spleen	Spleen
23	chr6:150868000-150869000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr6:150868000-150869000	Enhancers	Adipose Nuclei	Adipose
25	chr6:150868000-150870200	Weak transcription	Lung	lung
26	chr6:150868000-150870800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr6:150868000-150871200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr6:150868200-150869200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr6:150868200-150869600	Enhancers	Fetal Intestine Small	intestine
30	chr6:150868400-150869000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
31	chr6:150868400-150869000	Enhancers	Fetal Lung	lung
32	chr6:150868800-150869000	Enhancers	Brain Cingulate Gyrus	brain
33	chr6:150868800-150869000	Flanking Active TSS	HepG2	liver
34	chr6:150868800-150869200	Bivalent Enhancer	Brain Hippocampus Middle	brain

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