Variant report

Variant	rs34779574
Chromosome Location	chr6:150850288-150850289
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:150847959..150850613-chr6:150920501..150922911,2	K562	blood:

Variant related genes	Relation type
ENSG00000232891	Chromatin interaction
ENSG00000120278	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10499263	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10499264	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11964142	0.86[EUR][1000 genomes]
rs13193322	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13196518	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13197203	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13199757	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13206793	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13217733	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13218019	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17079805	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17079835	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs17079846	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17079852	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17079861	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs33951563	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34120777	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34219471	0.86[EUR][1000 genomes]
rs34393000	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34537150	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34597508	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34713924	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34782866	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35046394	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35260192	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4323319	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4566894	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55673001	0.85[EUR][1000 genomes]
rs55708277	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs59435275	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs67925488	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6924786	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73002876	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7774671	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9384545	0.86[EUR][1000 genomes]
rs9688466	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020067	chr6:150730783-150870708	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv886772	chr6:150743364-151024280	Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv464079	chr6:150836676-150873766	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv604850	chr6:150836676-150873766	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150847800-150850800	Enhancers	Colon Smooth Muscle	Colon
2	chr6:150848200-150850600	Enhancers	Stomach Smooth Muscle	stomach
3	chr6:150848600-150850600	Enhancers	Rectal Smooth Muscle	rectum
4	chr6:150848600-150851000	Enhancers	Placenta	Placenta
5	chr6:150849000-150850400	Enhancers	Primary B cells from cord blood	blood
6	chr6:150849400-150850400	Enhancers	Primary B cells from peripheral blood	blood
7	chr6:150849400-150850600	Enhancers	Fetal Stomach	stomach
8	chr6:150849600-150850600	Enhancers	Fetal Kidney	kidney
9	chr6:150849600-150850800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr6:150849800-150850400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr6:150849800-150850400	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr6:150849800-150850400	Enhancers	Duodenum Smooth Muscle	Duodenum
13	chr6:150849800-150850600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr6:150849800-150851400	Enhancers	Placenta Amnion	Placenta Amnion
15	chr6:150850000-150850400	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr6:150850000-150850400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr6:150850000-150850400	Enhancers	HUES48 Cell Line	embryonic stem cell
18	chr6:150850000-150850400	Enhancers	HUES6 Cell Line	embryonic stem cell
19	chr6:150850000-150850400	Enhancers	Fetal Heart	heart
20	chr6:150850000-150850600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr6:150850000-150850600	Enhancers	iPS-18 Cell Line	embryonic stem cell
22	chr6:150850000-150850600	Enhancers	iPS-20b Cell Line	embryonic stem cell
23	chr6:150850000-150850600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
24	chr6:150850000-150850600	Enhancers	Fetal Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links