Variant report

Variant	rs13196518
Chromosome Location	chr6:150820227-150820228
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:150812964..150816383-chr6:150817541..150822095,5	K562	blood:

Extended variants
information (count: 43 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10499263	1.00[CEU][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10499264	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11964142	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12190552	0.95[AFR][1000 genomes]
rs12205882	0.93[AFR][1000 genomes]
rs13193322	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13197203	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13199757	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13206793	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13217733	0.86[EUR][1000 genomes]
rs13218019	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17079805	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17079835	0.83[AFR][1000 genomes]
rs17079846	0.88[EUR][1000 genomes]
rs17079852	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17079861	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs33951563	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34120777	0.86[EUR][1000 genomes]
rs34219471	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34393000	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34537150	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34597508	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34713924	0.88[EUR][1000 genomes]
rs34779574	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34782866	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35046394	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35260192	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4075592	0.83[EUR][1000 genomes]
rs4323319	0.83[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];0.91[TSI][hapmap];0.95[YRI][hapmap];0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4566894	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs55673001	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs55708277	0.86[EUR][1000 genomes]
rs59435275	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs67925488	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6924786	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73002876	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7774671	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9384545	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9398002	0.82[EUR][1000 genomes]
rs9398004	0.82[EUR][1000 genomes]
rs9688466	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020067	chr6:150730783-150870708	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv886772	chr6:150743364-151024280	Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs13196518	PCMT1	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150817400-150820800	Weak transcription	Small Intestine	intestine

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