Variant report
Variant | rs9398004 |
---|---|
Chromosome Location | chr6:150788523-150788524 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs11964142 | 0.82[AMR][1000 genomes];0.83[EUR][1000 genomes] |
rs13193322 | 0.82[EUR][1000 genomes] |
rs13196518 | 0.82[EUR][1000 genomes] |
rs13206793 | 0.82[EUR][1000 genomes] |
rs17079805 | 0.82[EUR][1000 genomes] |
rs34219471 | 0.82[AMR][1000 genomes];0.83[EUR][1000 genomes] |
rs34782866 | 0.82[EUR][1000 genomes] |
rs4075592 | 0.92[AMR][1000 genomes];0.99[EUR][1000 genomes] |
rs4327711 | 0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs4469309 | 0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs55673001 | 0.82[AMR][1000 genomes];0.81[EUR][1000 genomes] |
rs6924786 | 0.82[EUR][1000 genomes] |
rs73002876 | 0.82[EUR][1000 genomes] |
rs9384533 | 0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs9384534 | 0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs9384545 | 0.82[AMR][1000 genomes];0.83[EUR][1000 genomes] |
rs9398002 | 0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1020067 | chr6:150730783-150870708 | Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
2 | nsv886772 | chr6:150743364-151024280 | Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
3 | nsv886773 | chr6:150751951-150799803 | Enhancers Weak transcription Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr6:150787600-150792600 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |