Variant report

Variant	rs4075592
Chromosome Location	chr6:150791665-150791666
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10499263	0.84[CEU][hapmap];0.85[GIH][hapmap];0.82[TSI][hapmap]
rs11964142	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13193322	0.83[EUR][1000 genomes]
rs13196518	0.83[EUR][1000 genomes]
rs13206793	0.83[EUR][1000 genomes]
rs17079805	0.83[EUR][1000 genomes]
rs34219471	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34782866	0.83[EUR][1000 genomes]
rs4323319	0.84[CEU][hapmap];0.85[GIH][hapmap];0.82[TSI][hapmap]
rs4327711	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4469309	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs55673001	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6924786	0.83[EUR][1000 genomes]
rs73002876	0.83[EUR][1000 genomes]
rs9384533	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9384534	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9384545	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9398002	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9398004	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020067	chr6:150730783-150870708	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv886772	chr6:150743364-151024280	Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv886773	chr6:150751951-150799803	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150787600-150792600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:150791200-150791800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr6:150791400-150791800	Enhancers	Fetal Heart	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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