Variant report

Variant	rs4469309
Chromosome Location	chr6:150776527-150776528
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10499263	1.00[MEX][hapmap]
rs4075592	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4323319	1.00[MEX][hapmap]
rs4327711	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9384533	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9384534	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9398002	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9398004	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020067	chr6:150730783-150870708	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv886772	chr6:150743364-151024280	Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv886773	chr6:150751951-150799803	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150773800-150777600	Enhancers	Spleen	Spleen
2	chr6:150773800-150777800	Weak transcription	Liver	Liver
3	chr6:150773800-150778200	Weak transcription	Left Ventricle	heart
4	chr6:150774200-150777000	Weak transcription	Placenta	Placenta
5	chr6:150774200-150777400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr6:150774400-150777600	Weak transcription	Fetal Intestine Large	intestine
7	chr6:150774600-150777200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr6:150774800-150776800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr6:150774800-150776800	Weak transcription	Right Atrium	heart
10	chr6:150774800-150777000	Weak transcription	Fetal Muscle Leg	muscle
11	chr6:150774800-150777000	Weak transcription	Lung	lung
12	chr6:150774800-150780600	Weak transcription	Fetal Muscle Trunk	muscle
13	chr6:150776200-150777400	Enhancers	Thymus	Thymus
14	chr6:150776400-150776600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
15	chr6:150776400-150777200	Enhancers	Fetal Thymus	thymus

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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