Variant report

Variant	rs4469956
Chromosome Location	chr12:45845825-45845826
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10506261	0.95[JPT][hapmap]
rs10506262	0.95[JPT][hapmap]
rs10748423	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10785572	0.86[TSI][hapmap]
rs10880774	0.86[TSI][hapmap]
rs10880780	0.95[JPT][hapmap]
rs11183000	0.95[JPT][hapmap]
rs11183004	0.95[JPT][hapmap]
rs11183009	0.95[JPT][hapmap]
rs11183028	0.95[JPT][hapmap]
rs11183040	0.95[JPT][hapmap]
rs11612531	0.95[JPT][hapmap]
rs12230667	0.95[JPT][hapmap]
rs12314896	0.87[CEU][hapmap];0.80[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12578593	0.91[JPT][hapmap]
rs12809717	0.95[JPT][hapmap]
rs12821880	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12829496	0.90[JPT][hapmap]
rs1986426	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2408260	1.00[JPT][hapmap]
rs2408315	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2408316	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2897868	0.86[TSI][hapmap]
rs36030426	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4768611	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4768615	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6582546	1.00[JPT][hapmap]
rs7136295	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7302256	0.95[JPT][hapmap]
rs7307697	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7958429	0.86[TSI][hapmap]
rs7965912	0.95[JPT][hapmap]
rs7967892	0.86[TSI][hapmap]
rs9788251	0.95[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832395	chr12:45841765-46039297	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:45845200-45846200	Enhancers	Primary hematopoietic stem cells short term culture	blood
2	chr12:45845200-45846200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr12:45845200-45846400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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