Variant report

Variant	rs7307697
Chromosome Location	chr12:45838860-45838861
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ANO6-2	chr12:45838549-45839221	NONHSAT027826

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10506261	0.95[JPT][hapmap]
rs10506262	0.95[JPT][hapmap];0.84[LWK][hapmap]
rs10748423	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10785572	0.86[TSI][hapmap]
rs10880774	0.86[TSI][hapmap]
rs10880780	0.95[JPT][hapmap]
rs11183000	0.95[JPT][hapmap]
rs11183004	0.95[JPT][hapmap]
rs11183009	0.95[JPT][hapmap]
rs11183028	0.95[JPT][hapmap]
rs11183040	0.95[JPT][hapmap];0.89[YRI][hapmap]
rs11612531	0.95[JPT][hapmap]
rs12230667	0.95[JPT][hapmap]
rs12231032	0.83[AFR][1000 genomes]
rs12314896	0.87[CEU][hapmap];0.80[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs12578593	0.91[JPT][hapmap]
rs12809717	0.95[JPT][hapmap]
rs12821880	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12829496	0.90[JPT][hapmap]
rs1986426	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2408260	1.00[JPT][hapmap]
rs2408315	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2408316	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2897868	0.86[TSI][hapmap]
rs36030426	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4469956	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4768611	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4768615	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6582546	1.00[JPT][hapmap]
rs7136295	0.83[ASN][1000 genomes]
rs7302256	0.95[JPT][hapmap]
rs7958429	0.86[TSI][hapmap]
rs7965912	0.95[JPT][hapmap];0.84[LWK][hapmap]
rs7967892	0.86[TSI][hapmap]
rs9788251	0.95[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv972984	chr12:45831852-45839014	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:45827600-45842800	Weak transcription	Aorta	Aorta
2	chr12:45828000-45841800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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