Variant report

Variant	rs12231032
Chromosome Location	chr12:45833140-45833141
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:45826943..45829622-chr12:45831325..45834835,3	MCF-7	breast:

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs10506261	0.80[CEU][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10506262	0.89[ASW][hapmap];0.80[CEU][hapmap];0.85[LWK][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10880779	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10880780	0.80[CEU][hapmap];0.91[EUR][1000 genomes]
rs10880781	0.94[CHB][hapmap];0.95[JPT][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10880782	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10880783	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11183000	0.80[CEU][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes]
rs11183001	0.91[EUR][1000 genomes]
rs11183004	0.80[CEU][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11183009	0.80[CEU][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11183012	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11183014	0.85[CHD][hapmap]
rs11183019	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11183023	0.85[CHB][hapmap]
rs11183027	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11183028	0.80[CEU][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11183029	0.85[CHB][hapmap];0.85[CHD][hapmap]
rs11183030	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11183034	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11183040	0.89[CEU][hapmap];0.93[YRI][hapmap];0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11536237	0.89[EUR][1000 genomes]
rs11553695	0.85[CHB][hapmap]
rs11611476	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11612092	0.89[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11612531	0.80[CEU][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12230667	0.80[CEU][hapmap];0.91[EUR][1000 genomes]
rs12578593	0.80[CEU][hapmap];0.91[EUR][1000 genomes]
rs12580984	0.91[EUR][1000 genomes]
rs12580991	0.91[EUR][1000 genomes]
rs12809159	0.82[CHB][hapmap]
rs12809717	0.80[CEU][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes]
rs12812732	0.89[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12813734	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12819619	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12829496	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1316280	0.91[EUR][1000 genomes]
rs17095868	0.95[CHB][hapmap];0.92[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs17095871	0.89[CEU][hapmap];0.89[CHB][hapmap];0.89[JPT][hapmap];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17095872	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1863549	0.82[CHD][hapmap]
rs1913696	0.82[CHD][hapmap]
rs2081589	0.92[EUR][1000 genomes]
rs2081590	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2162322	0.84[CHB][hapmap]
rs2408260	0.80[CEU][hapmap];0.91[EUR][1000 genomes]
rs34031195	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34470081	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34785109	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35634751	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35754392	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35816444	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3803176	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3803178	0.85[CHD][hapmap]
rs3803179	0.85[CHB][hapmap]
rs57911796	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58503970	0.91[EUR][1000 genomes]
rs59893450	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6582546	0.80[CEU][hapmap];0.91[EUR][1000 genomes]
rs7299836	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7302251	0.92[EUR][1000 genomes]
rs7302256	0.80[CEU][hapmap];0.92[EUR][1000 genomes]
rs7304126	0.92[EUR][1000 genomes]
rs7307697	0.83[AFR][1000 genomes]
rs7308092	0.89[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7965912	0.89[ASW][hapmap];0.80[CEU][hapmap];0.85[LWK][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7968063	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7977798	0.89[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9788195	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9788251	1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv972984	chr12:45831852-45839014	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:45825600-45835800	Weak transcription	Colon Smooth Muscle	Colon
2	chr12:45827600-45834800	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr12:45827600-45842800	Weak transcription	Aorta	Aorta
4	chr12:45828000-45841800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr12:45828400-45835400	Weak transcription	Adipose Nuclei	Adipose
6	chr12:45830000-45833600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr12:45832800-45833200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr12:45832800-45833400	Enhancers	Osteobl	bone
9	chr12:45832800-45833600	Enhancers	Muscle Satellite Cultured Cells	--
10	chr12:45832800-45833800	Enhancers	HSMM	muscle
11	chr12:45833000-45833200	Enhancers	NHDF-Ad	bronchial
12	chr12:45833000-45833400	Enhancers	NH-A	brain

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