Variant report

Variant	rs7965912
Chromosome Location	chr12:45814498-45814499
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:45807772..45809963-chr12:45814074..45815813,2	K562	blood:
2	chr12:45807394..45809963-chr12:45812427..45815813,3	K562	blood:

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10506261	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10506262	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10880779	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10880780	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10880781	0.85[YRI][hapmap];0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10880782	0.90[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10880783	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11183000	1.00[CEU][hapmap];0.91[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11183001	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11183004	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11183009	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11183012	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11183019	0.90[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11183027	0.90[CEU][hapmap];0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11183028	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11183030	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11183034	0.94[EUR][1000 genomes]
rs11183040	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11536237	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11611476	0.90[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11612092	0.90[CEU][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11612531	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12230667	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12231032	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12314896	0.94[JPT][hapmap]
rs12578593	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12580984	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12580991	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12809717	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12812732	0.90[CEU][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12813734	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12819619	0.90[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12829496	1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1316280	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17095871	0.90[CEU][hapmap];0.94[EUR][1000 genomes]
rs17095872	0.90[CEU][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2081589	1.00[CEU][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2081590	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2408260	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34031195	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34470081	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34785109	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35634751	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35754392	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35816444	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3803176	0.90[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3803177	0.89[YRI][hapmap]
rs57911796	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs58503970	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs59893450	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6582546	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7299836	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7302251	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7302256	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7304126	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7308092	0.90[CEU][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7313617	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7968063	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7977798	0.87[ASW][hapmap];0.90[CEU][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9788195	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9788251	0.83[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:45759200-45822600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr12:45764400-45821000	Weak transcription	Brain Cingulate Gyrus	brain
3	chr12:45764600-45815400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr12:45772600-45815400	Weak transcription	K562	blood
5	chr12:45780400-45829800	Weak transcription	Brain Anterior Caudate	brain
6	chr12:45783200-45818800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr12:45783400-45826400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr12:45786600-45827000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr12:45792000-45828600	Strong transcription	Monocytes-CD14+_RO01746	blood
10	chr12:45792600-45822600	Weak transcription	Colonic Mucosa	Colon
11	chr12:45792600-45827000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr12:45793000-45827600	Strong transcription	Primary monocytes fromperipheralblood	blood
13	chr12:45794200-45823200	Strong transcription	Primary T helper cells fromperipheralblood	blood
14	chr12:45795200-45817800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr12:45795600-45825600	Strong transcription	Fetal Intestine Large	intestine
16	chr12:45796400-45829600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr12:45796600-45828400	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr12:45796600-45828600	Weak transcription	Brain Substantia Nigra	brain
19	chr12:45796600-45828800	Weak transcription	Brain Angular Gyrus	brain
20	chr12:45797600-45819200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr12:45804400-45828000	Weak transcription	Brain Hippocampus Middle	brain
22	chr12:45804400-45830200	Weak transcription	Brain Germinal Matrix	brain
23	chr12:45806000-45822400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
24	chr12:45806400-45825600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr12:45806800-45816200	Weak transcription	Rectal Smooth Muscle	rectum
26	chr12:45806800-45817600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr12:45806800-45826000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
28	chr12:45806800-45829800	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr12:45807000-45815400	Weak transcription	HUES48 Cell Line	embryonic stem cell
30	chr12:45807200-45815000	Weak transcription	Primary B cells from peripheral blood	blood
31	chr12:45808600-45819800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr12:45809600-45815000	Strong transcription	Left Ventricle	heart
33	chr12:45809600-45816600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr12:45809600-45819600	Weak transcription	Fetal Heart	heart
35	chr12:45809600-45823800	Weak transcription	Esophagus	oesophagus
36	chr12:45809600-45824800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
37	chr12:45809600-45826600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
38	chr12:45809800-45816400	Weak transcription	Fetal Kidney	kidney
39	chr12:45809800-45817200	Strong transcription	A549	lung
40	chr12:45809800-45820200	Weak transcription	HSMMtube	muscle
41	chr12:45809800-45820400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr12:45809800-45824000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr12:45810600-45814600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
44	chr12:45810600-45826000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr12:45810800-45816200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
46	chr12:45810800-45821600	Weak transcription	H1 Cell Line	embryonic stem cell
47	chr12:45810800-45825400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr12:45811400-45819200	Weak transcription	Pancreas	Pancrea
49	chr12:45811600-45815400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
50	chr12:45811600-45820200	Weak transcription	Gastric	stomach

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