Variant report

Variant	rs10880781
Chromosome Location	chr12:45818181-45818182
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:45809224..45812337-chr12:45815815..45818970,3	K562	blood:
2	chr12:45816584..45818439-chr12:45823232..45825090,2	K562	blood:

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs10506261	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10506262	0.85[YRI][hapmap];0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10880779	0.89[EUR][1000 genomes]
rs10880780	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10880782	0.94[CHB][hapmap];0.95[JPT][hapmap];0.86[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10880783	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11183000	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11183001	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11183004	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11183009	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11183012	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11183019	0.94[CHB][hapmap];0.95[JPT][hapmap];0.86[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11183023	0.84[CHB][hapmap]
rs11183027	0.94[CHB][hapmap];0.95[JPT][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11183028	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11183029	0.83[CHB][hapmap]
rs11183030	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11183034	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11183040	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11536237	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11553695	0.84[CHB][hapmap]
rs11611476	0.94[CHB][hapmap];0.95[JPT][hapmap];0.86[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11612092	0.89[CHB][hapmap];0.90[JPT][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11612531	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12230667	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12231032	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12578593	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12580984	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12580991	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12809717	0.90[EUR][1000 genomes]
rs12812732	0.89[CHB][hapmap];0.90[JPT][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12813734	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12819619	0.94[CHB][hapmap];0.95[JPT][hapmap];0.86[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12829496	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1316280	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17095868	0.88[CHB][hapmap];0.90[JPT][hapmap];0.92[ASN][1000 genomes]
rs17095871	0.83[CHB][hapmap];0.84[JPT][hapmap];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17095872	0.94[CHB][hapmap];0.95[JPT][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2081589	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2081590	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2162322	0.83[CHB][hapmap]
rs2408260	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34031195	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34470081	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34785109	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35634751	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35754392	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35816444	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3803176	0.94[CHB][hapmap];0.95[JPT][hapmap];0.86[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3803179	0.84[CHB][hapmap]
rs57911796	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58503970	0.89[EUR][1000 genomes]
rs59893450	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6582546	0.89[EUR][1000 genomes]
rs7299836	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7302251	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7302256	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7304126	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7308092	0.89[CHB][hapmap];0.90[JPT][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7965912	0.85[YRI][hapmap];0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7968063	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7977798	0.94[CHB][hapmap];0.90[JPT][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9788195	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9788251	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:45759200-45822600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr12:45764400-45821000	Weak transcription	Brain Cingulate Gyrus	brain
3	chr12:45780400-45829800	Weak transcription	Brain Anterior Caudate	brain
4	chr12:45783200-45818800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr12:45783400-45826400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr12:45786600-45827000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr12:45792000-45828600	Strong transcription	Monocytes-CD14+_RO01746	blood
8	chr12:45792600-45822600	Weak transcription	Colonic Mucosa	Colon
9	chr12:45792600-45827000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr12:45793000-45827600	Strong transcription	Primary monocytes fromperipheralblood	blood
11	chr12:45794200-45823200	Strong transcription	Primary T helper cells fromperipheralblood	blood
12	chr12:45795600-45825600	Strong transcription	Fetal Intestine Large	intestine
13	chr12:45796400-45829600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr12:45796600-45828400	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr12:45796600-45828600	Weak transcription	Brain Substantia Nigra	brain
16	chr12:45796600-45828800	Weak transcription	Brain Angular Gyrus	brain
17	chr12:45797600-45819200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr12:45804400-45828000	Weak transcription	Brain Hippocampus Middle	brain
19	chr12:45804400-45830200	Weak transcription	Brain Germinal Matrix	brain
20	chr12:45806000-45822400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
21	chr12:45806400-45825600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr12:45806800-45826000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
23	chr12:45806800-45829800	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr12:45808600-45819800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr12:45809600-45819600	Weak transcription	Fetal Heart	heart
26	chr12:45809600-45823800	Weak transcription	Esophagus	oesophagus
27	chr12:45809600-45824800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
28	chr12:45809600-45826600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr12:45809800-45820200	Weak transcription	HSMMtube	muscle
30	chr12:45809800-45820400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr12:45809800-45824000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr12:45810600-45826000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr12:45810800-45821600	Weak transcription	H1 Cell Line	embryonic stem cell
34	chr12:45810800-45825400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr12:45811400-45819200	Weak transcription	Pancreas	Pancrea
36	chr12:45811600-45820200	Weak transcription	Gastric	stomach
37	chr12:45811600-45824400	Weak transcription	Right Ventricle	heart
38	chr12:45811600-45826800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr12:45811600-45829400	Weak transcription	Rectal Mucosa Donor 31	rectum
40	chr12:45811800-45820200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
41	chr12:45812200-45818400	Weak transcription	HepG2	liver
42	chr12:45812200-45825800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
43	chr12:45812200-45826600	Weak transcription	H9 Cell Line	embryonic stem cell
44	chr12:45812400-45820800	Weak transcription	NHLF	lung
45	chr12:45812600-45818800	Weak transcription	Muscle Satellite Cultured Cells	--
46	chr12:45812600-45820200	Weak transcription	Spleen	Spleen
47	chr12:45812600-45832000	Weak transcription	Small Intestine	intestine
48	chr12:45813000-45829600	Weak transcription	Rectal Mucosa Donor 29	rectum
49	chr12:45813200-45825200	Weak transcription	Fetal Brain Female	brain
50	chr12:45813800-45825200	Strong transcription	Dnd41	blood

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