Variant report

Variant	rs7977798
Chromosome Location	chr12:45810144-45810145
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:45809224..45812337-chr12:45815815..45818970,3	K562	blood:
2	chr12:45803063..45804770-chr12:45808149..45810267,2	MCF-7	breast:

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs10506261	0.90[CEU][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10506262	0.87[ASW][hapmap];0.90[CEU][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10785569	0.85[CHD][hapmap]
rs10880779	0.92[EUR][1000 genomes]
rs10880780	0.90[CEU][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10880781	0.94[CHB][hapmap];0.90[JPT][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10880782	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10880783	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11182986	0.85[CHD][hapmap]
rs11182988	0.82[CHD][hapmap]
rs11183000	0.90[CEU][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11183001	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11183004	0.90[CEU][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11183009	0.90[CEU][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11183012	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11183014	0.92[CHD][hapmap]
rs11183019	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11183023	0.85[CHB][hapmap]
rs11183027	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11183028	0.90[CEU][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11183029	0.85[CHB][hapmap];0.92[CHD][hapmap]
rs11183030	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11183034	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11183040	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11536237	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11553695	0.85[CHB][hapmap]
rs11611476	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11612092	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11612531	0.90[CEU][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12230667	0.90[CEU][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12231032	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12297071	0.85[CHD][hapmap]
rs12578593	0.90[CEU][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12580984	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12580991	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12809159	0.82[CHB][hapmap]
rs12809717	0.90[CEU][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes]
rs12812732	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12813734	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12819619	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12829496	0.89[CEU][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1316280	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17095868	0.81[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs17095871	1.00[CEU][hapmap];0.89[CHB][hapmap];0.94[JPT][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17095872	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.87[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1863549	0.90[CHD][hapmap]
rs1913696	0.90[CHD][hapmap]
rs2081589	0.86[CEU][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2081590	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2162322	0.84[CHB][hapmap]
rs2408260	0.90[CEU][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34031195	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34470081	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34785109	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35634751	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35754392	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35816444	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3803176	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3803178	0.92[CHD][hapmap]
rs3803179	0.85[CHB][hapmap]
rs57911796	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58503970	0.92[EUR][1000 genomes]
rs59893450	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6582546	0.90[CEU][hapmap];0.92[EUR][1000 genomes]
rs7299836	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7302251	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7302256	0.90[CEU][hapmap];0.89[MEX][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7304126	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7308092	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs74081808	0.91[AFR][1000 genomes]
rs7965912	0.87[ASW][hapmap];0.90[CEU][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7968063	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9788195	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9788251	1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:45759200-45822600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr12:45764400-45821000	Weak transcription	Brain Cingulate Gyrus	brain
3	chr12:45764600-45815400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr12:45772600-45815400	Weak transcription	K562	blood
5	chr12:45774800-45811400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr12:45780400-45829800	Weak transcription	Brain Anterior Caudate	brain
7	chr12:45783200-45818800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr12:45783400-45826400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr12:45786600-45827000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr12:45792000-45828600	Strong transcription	Monocytes-CD14+_RO01746	blood
11	chr12:45792600-45822600	Weak transcription	Colonic Mucosa	Colon
12	chr12:45792600-45827000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr12:45792800-45811800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr12:45793000-45827600	Strong transcription	Primary monocytes fromperipheralblood	blood
15	chr12:45794200-45823200	Strong transcription	Primary T helper cells fromperipheralblood	blood
16	chr12:45794600-45812200	Weak transcription	Fetal Brain Male	brain
17	chr12:45795000-45812200	Weak transcription	Fetal Brain Female	brain
18	chr12:45795200-45813200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr12:45795200-45817800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
20	chr12:45795400-45813400	Strong transcription	Dnd41	blood
21	chr12:45795600-45825600	Strong transcription	Fetal Intestine Large	intestine
22	chr12:45796000-45812400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr12:45796400-45812200	Weak transcription	Hela-S3	cervix
24	chr12:45796400-45829600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr12:45796600-45828400	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr12:45796600-45828600	Weak transcription	Brain Substantia Nigra	brain
27	chr12:45796600-45828800	Weak transcription	Brain Angular Gyrus	brain
28	chr12:45797600-45819200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
29	chr12:45799800-45811800	Strong transcription	Fetal Stomach	stomach
30	chr12:45800800-45813000	Strong transcription	Primary T cells from cord blood	blood
31	chr12:45801600-45813000	Strong transcription	Primary neutrophils fromperipheralblood	blood
32	chr12:45801800-45812600	Strong transcription	Duodenum Smooth Muscle	Duodenum
33	chr12:45802000-45812800	Strong transcription	Fetal Lung	lung
34	chr12:45802200-45812800	Strong transcription	Primary B cells from cord blood	blood
35	chr12:45802600-45814000	Weak transcription	Stomach Mucosa	stomach
36	chr12:45803600-45812200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr12:45804200-45811200	Weak transcription	Psoas Muscle	Psoas
38	chr12:45804200-45812600	Strong transcription	Fetal Muscle Leg	muscle
39	chr12:45804200-45813000	Strong transcription	Fetal Muscle Trunk	muscle
40	chr12:45804400-45828000	Weak transcription	Brain Hippocampus Middle	brain
41	chr12:45804400-45830200	Weak transcription	Brain Germinal Matrix	brain
42	chr12:45805200-45812000	Strong transcription	Fetal Intestine Small	intestine
43	chr12:45805600-45812600	Strong transcription	Thymus	Thymus
44	chr12:45806000-45822400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
45	chr12:45806400-45810400	Weak transcription	Rectal Mucosa Donor 31	rectum
46	chr12:45806400-45825600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr12:45806800-45811000	Weak transcription	Colon Smooth Muscle	Colon
48	chr12:45806800-45816200	Weak transcription	Rectal Smooth Muscle	rectum
49	chr12:45806800-45817600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
50	chr12:45806800-45826000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

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