Variant report

Variant	rs11553695
Chromosome Location	chr12:45825730-45825731
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10431612	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10785569	1.00[CEU][hapmap];0.84[CHB][hapmap];0.92[EUR][1000 genomes]
rs10880775	1.00[CEU][hapmap];0.84[CHB][hapmap];0.94[EUR][1000 genomes]
rs10880777	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10880781	0.84[CHB][hapmap]
rs10880782	0.90[CHB][hapmap]
rs11182983	1.00[CEU][hapmap];0.84[CHB][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11182986	1.00[CEU][hapmap];0.84[CHB][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11182988	1.00[CEU][hapmap];0.84[CHB][hapmap];0.96[EUR][1000 genomes]
rs11182989	1.00[CEU][hapmap];0.82[CHB][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11182990	1.00[CEU][hapmap];0.84[CHB][hapmap];0.96[EUR][1000 genomes]
rs11182991	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11182995	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11182996	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11182998	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11183002	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11183005	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11183006	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11183007	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11183010	1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11183011	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11183013	1.00[CEU][hapmap];0.89[CHB][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11183014	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11183017	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11183019	0.85[CHB][hapmap]
rs11183021	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11183023	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11183027	0.90[CHB][hapmap]
rs11183029	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11183037	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11183038	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11183042	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11533629	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11543435	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11611476	0.85[CHB][hapmap]
rs11612092	0.81[CHB][hapmap]
rs12228410	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12231770	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12297071	1.00[CEU][hapmap];0.84[CHB][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12809159	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12812732	0.81[CHB][hapmap]
rs12818836	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12819619	0.90[CHB][hapmap]
rs12829186	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13378014	1.00[CEU][hapmap];0.81[CHB][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17095868	0.81[CHB][hapmap]
rs17095872	0.85[CHB][hapmap]
rs1863549	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1913696	0.85[CHB][hapmap]
rs2090230	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2162322	0.82[CEU][hapmap];0.89[CHB][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34321530	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34547270	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35168706	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35213944	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35847979	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs3803176	0.85[CHB][hapmap]
rs3803178	0.82[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3803179	0.82[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58640880	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs71461108	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7308092	0.85[CHB][hapmap]
rs7977798	0.85[CHB][hapmap]

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:45780400-45829800	Weak transcription	Brain Anterior Caudate	brain
2	chr12:45783400-45826400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr12:45786600-45827000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr12:45792000-45828600	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr12:45792600-45827000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr12:45793000-45827600	Strong transcription	Primary monocytes fromperipheralblood	blood
7	chr12:45796400-45829600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr12:45796600-45828400	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr12:45796600-45828600	Weak transcription	Brain Substantia Nigra	brain
10	chr12:45796600-45828800	Weak transcription	Brain Angular Gyrus	brain
11	chr12:45804400-45828000	Weak transcription	Brain Hippocampus Middle	brain
12	chr12:45804400-45830200	Weak transcription	Brain Germinal Matrix	brain
13	chr12:45806800-45826000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
14	chr12:45806800-45829800	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr12:45809600-45826600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr12:45810600-45826000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr12:45811600-45826800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr12:45811600-45829400	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr12:45812200-45825800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
20	chr12:45812200-45826600	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr12:45812600-45832000	Weak transcription	Small Intestine	intestine
22	chr12:45813000-45829600	Weak transcription	Rectal Mucosa Donor 29	rectum
23	chr12:45813800-45825800	Strong transcription	Adipose Nuclei	Adipose
24	chr12:45814800-45825800	Strong transcription	Fetal Muscle Trunk	muscle
25	chr12:45814800-45825800	Strong transcription	Skeletal Muscle Female	skeletal muscle
26	chr12:45814800-45826000	Strong transcription	Skeletal Muscle Male	skeletal muscle
27	chr12:45816400-45828200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
28	chr12:45817000-45826200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
29	chr12:45817400-45828800	Weak transcription	NHEK	skin
30	chr12:45817800-45829200	Weak transcription	Psoas Muscle	Psoas
31	chr12:45818000-45826400	Weak transcription	Fetal Kidney	kidney
32	chr12:45818000-45828600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr12:45819000-45825800	Strong transcription	Duodenum Smooth Muscle	Duodenum
34	chr12:45819400-45827600	Strong transcription	Liver	Liver
35	chr12:45819600-45830000	Weak transcription	GM12878-XiMat	blood
36	chr12:45819800-45826400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
37	chr12:45820000-45826600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
38	chr12:45820000-45828000	Weak transcription	Primary T helper cells PMA-I stimulated	--
39	chr12:45820600-45827000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr12:45820800-45826200	Strong transcription	Primary hematopoietic stem cells	blood
41	chr12:45821000-45826600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
42	chr12:45821200-45825800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
43	chr12:45821200-45825800	Strong transcription	Left Ventricle	heart
44	chr12:45821200-45826200	Strong transcription	HSMM	muscle
45	chr12:45821200-45829200	Weak transcription	Right Atrium	heart
46	chr12:45821200-45829400	Weak transcription	NHLF	lung
47	chr12:45821200-45829800	Weak transcription	Fetal Heart	heart
48	chr12:45821200-45833000	Weak transcription	NH-A	brain
49	chr12:45822000-45826600	Weak transcription	H1 Cell Line	embryonic stem cell
50	chr12:45822000-45828000	Weak transcription	Cortex derived primary cultured neurospheres	brain

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