Variant report

Variant	rs11183038
Chromosome Location	chr12:45834557-45834558
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:45826943..45829622-chr12:45831325..45834835,3	MCF-7	breast:

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10431612	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10785569	0.88[EUR][1000 genomes]
rs10880775	0.90[EUR][1000 genomes]
rs10880777	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11182983	0.90[EUR][1000 genomes]
rs11182986	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11182988	0.92[EUR][1000 genomes]
rs11182989	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11182990	0.92[EUR][1000 genomes]
rs11182991	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11182995	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11182996	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11182998	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11183002	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11183005	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11183006	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11183007	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11183010	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11183011	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11183013	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11183014	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11183017	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11183021	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11183023	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11183029	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11183037	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11183042	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11533629	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11543435	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11553695	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12228410	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12231770	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12297071	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12809159	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12818836	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12829186	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13378014	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1863549	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2090230	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2162322	0.92[EUR][1000 genomes]
rs34321530	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34547270	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35168706	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35213944	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35847979	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3803178	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3803179	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58640880	0.88[EUR][1000 genomes]
rs71461108	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv972984	chr12:45831852-45839014	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:45825600-45835800	Weak transcription	Colon Smooth Muscle	Colon
2	chr12:45827600-45834800	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr12:45827600-45842800	Weak transcription	Aorta	Aorta
4	chr12:45828000-45841800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr12:45828400-45835400	Weak transcription	Adipose Nuclei	Adipose

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