Variant report

Variant	rs11183029
Chromosome Location	chr12:45820169-45820170
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:45819465..45821580-chr12:46117779..46120508,2	K562	blood:

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs1015626	0.89[TSI][hapmap]
rs10431612	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10785566	0.90[TSI][hapmap]
rs10785569	1.00[CEU][hapmap];0.84[CHB][hapmap];0.92[CHD][hapmap];0.92[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes]
rs10880775	1.00[CEU][hapmap];0.83[CHB][hapmap];0.94[EUR][1000 genomes]
rs10880777	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10880781	0.83[CHB][hapmap]
rs10880782	0.90[CHB][hapmap]
rs11182965	0.90[TSI][hapmap]
rs11182983	1.00[CEU][hapmap];0.84[CHB][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11182986	1.00[CEU][hapmap];0.84[CHB][hapmap];0.92[CHD][hapmap];0.92[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11182988	1.00[CEU][hapmap];0.84[CHB][hapmap];0.90[CHD][hapmap];0.92[GIH][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes]
rs11182989	1.00[CEU][hapmap];0.82[CHB][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11182990	1.00[CEU][hapmap];0.83[CHB][hapmap];0.96[EUR][1000 genomes]
rs11182991	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11182995	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11182996	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11182998	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11183002	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11183005	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11183006	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11183007	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11183010	1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11183011	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11183013	1.00[CEU][hapmap];0.89[CHB][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11183014	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11183017	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11183019	0.85[CHB][hapmap]
rs11183021	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11183023	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11183027	0.90[CHB][hapmap]
rs11183037	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11183038	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11183042	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11533629	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11543435	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11553695	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11611476	0.85[CHB][hapmap]
rs11612092	0.81[CHB][hapmap]
rs12228410	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12231770	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12297071	1.00[CEU][hapmap];0.84[CHB][hapmap];0.92[CHD][hapmap];0.92[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12809159	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12812732	0.81[CHB][hapmap]
rs12818836	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12819619	0.90[CHB][hapmap]
rs12829186	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13378014	1.00[CEU][hapmap];0.81[CHB][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17095868	0.81[CHB][hapmap];0.92[CHD][hapmap]
rs17095872	0.84[CHB][hapmap]
rs1863549	1.00[CEU][hapmap];0.89[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1913696	0.85[CHB][hapmap];0.97[CHD][hapmap];0.81[ASN][1000 genomes]
rs2090230	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2162322	0.82[CEU][hapmap];0.89[CHB][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34321530	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34547270	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35168706	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35213944	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35847979	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3803176	0.85[CHB][hapmap]
rs3803178	0.82[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3803179	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs58640880	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7138247	0.90[TSI][hapmap]
rs71461108	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7307262	0.90[TSI][hapmap]
rs7308092	0.85[CHB][hapmap]
rs7309615	0.90[TSI][hapmap]
rs7965430	0.90[TSI][hapmap]
rs7977798	0.85[CHB][hapmap];0.92[CHD][hapmap]

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:45759200-45822600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr12:45764400-45821000	Weak transcription	Brain Cingulate Gyrus	brain
3	chr12:45780400-45829800	Weak transcription	Brain Anterior Caudate	brain
4	chr12:45783400-45826400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr12:45786600-45827000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr12:45792000-45828600	Strong transcription	Monocytes-CD14+_RO01746	blood
7	chr12:45792600-45822600	Weak transcription	Colonic Mucosa	Colon
8	chr12:45792600-45827000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr12:45793000-45827600	Strong transcription	Primary monocytes fromperipheralblood	blood
10	chr12:45794200-45823200	Strong transcription	Primary T helper cells fromperipheralblood	blood
11	chr12:45795600-45825600	Strong transcription	Fetal Intestine Large	intestine
12	chr12:45796400-45829600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr12:45796600-45828400	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr12:45796600-45828600	Weak transcription	Brain Substantia Nigra	brain
15	chr12:45796600-45828800	Weak transcription	Brain Angular Gyrus	brain
16	chr12:45804400-45828000	Weak transcription	Brain Hippocampus Middle	brain
17	chr12:45804400-45830200	Weak transcription	Brain Germinal Matrix	brain
18	chr12:45806000-45822400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
19	chr12:45806400-45825600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr12:45806800-45826000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
21	chr12:45806800-45829800	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr12:45809600-45823800	Weak transcription	Esophagus	oesophagus
23	chr12:45809600-45824800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
24	chr12:45809600-45826600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr12:45809800-45820200	Weak transcription	HSMMtube	muscle
26	chr12:45809800-45820400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr12:45809800-45824000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr12:45810600-45826000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr12:45810800-45821600	Weak transcription	H1 Cell Line	embryonic stem cell
30	chr12:45810800-45825400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr12:45811600-45820200	Weak transcription	Gastric	stomach
32	chr12:45811600-45824400	Weak transcription	Right Ventricle	heart
33	chr12:45811600-45826800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr12:45811600-45829400	Weak transcription	Rectal Mucosa Donor 31	rectum
35	chr12:45811800-45820200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
36	chr12:45812200-45825800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
37	chr12:45812200-45826600	Weak transcription	H9 Cell Line	embryonic stem cell
38	chr12:45812400-45820800	Weak transcription	NHLF	lung
39	chr12:45812600-45820200	Weak transcription	Spleen	Spleen
40	chr12:45812600-45832000	Weak transcription	Small Intestine	intestine
41	chr12:45813000-45829600	Weak transcription	Rectal Mucosa Donor 29	rectum
42	chr12:45813200-45825200	Weak transcription	Fetal Brain Female	brain
43	chr12:45813800-45825200	Strong transcription	Dnd41	blood
44	chr12:45813800-45825800	Strong transcription	Adipose Nuclei	Adipose
45	chr12:45814000-45825600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr12:45814200-45824600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr12:45814400-45825600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr12:45814600-45822000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
49	chr12:45814800-45821400	Strong transcription	Primary B cells from cord blood	blood
50	chr12:45814800-45821400	Strong transcription	Duodenum Mucosa	Duodenum

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