Variant report

Variant	rs3803178
Chromosome Location	chr12:45824581-45824582
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:45821285..45822837-chr12:45823323..45825072,2	K562	blood:
2	chr12:45816584..45818439-chr12:45823232..45825090,2	K562	blood:

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs1015626	0.90[TSI][hapmap]
rs10431612	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10785566	0.90[TSI][hapmap]
rs10785569	0.82[CEU][hapmap];0.89[CHB][hapmap];0.92[CHD][hapmap];0.92[GIH][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes]
rs10880775	0.82[CEU][hapmap];0.89[CHB][hapmap];0.94[EUR][1000 genomes]
rs10880777	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10880782	0.84[CHB][hapmap]
rs11182965	0.90[TSI][hapmap]
rs11182983	0.82[CEU][hapmap];0.89[CHB][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11182986	0.82[CEU][hapmap];0.89[CHB][hapmap];0.92[CHD][hapmap];0.92[GIH][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11182988	0.82[CEU][hapmap];0.89[CHB][hapmap];0.90[CHD][hapmap];0.92[GIH][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes]
rs11182989	0.82[CEU][hapmap];0.88[CHB][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11182990	0.82[CEU][hapmap];0.89[CHB][hapmap];0.96[EUR][1000 genomes]
rs11182991	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11182995	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11182996	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11182998	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11183002	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11183005	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11183006	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11183007	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11183010	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11183011	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11183013	0.82[CEU][hapmap];0.94[CHB][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11183014	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11183017	0.82[CEU][hapmap];0.95[CHB][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11183021	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11183023	0.82[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11183027	0.84[CHB][hapmap]
rs11183029	0.82[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11183037	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11183038	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11183042	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11533629	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11543435	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11553695	0.82[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11612092	0.85[CHB][hapmap]
rs12228410	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12231770	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12297071	0.82[CEU][hapmap];0.89[CHB][hapmap];0.92[CHD][hapmap];0.92[GIH][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12809159	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12812732	0.85[CHB][hapmap]
rs12818836	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12819619	0.84[CHB][hapmap]
rs12829186	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13378014	0.82[CEU][hapmap];0.87[CHB][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17095868	0.85[CHB][hapmap];0.92[CHD][hapmap]
rs1863549	0.82[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1913696	0.90[CHB][hapmap];0.97[CHD][hapmap];0.81[ASN][1000 genomes]
rs2090230	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2162322	0.94[CHB][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34321530	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34547270	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35168706	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35213944	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35847979	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3803179	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs58640880	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7138247	0.90[TSI][hapmap]
rs71461108	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7307262	0.90[TSI][hapmap]
rs7308092	0.90[CHB][hapmap]
rs7309615	0.90[TSI][hapmap]
rs7965430	0.90[TSI][hapmap]
rs7977798	0.92[CHD][hapmap]

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:45780400-45829800	Weak transcription	Brain Anterior Caudate	brain
2	chr12:45783400-45826400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr12:45786600-45827000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr12:45792000-45828600	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr12:45792600-45827000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr12:45793000-45827600	Strong transcription	Primary monocytes fromperipheralblood	blood
7	chr12:45795600-45825600	Strong transcription	Fetal Intestine Large	intestine
8	chr12:45796400-45829600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr12:45796600-45828400	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr12:45796600-45828600	Weak transcription	Brain Substantia Nigra	brain
11	chr12:45796600-45828800	Weak transcription	Brain Angular Gyrus	brain
12	chr12:45804400-45828000	Weak transcription	Brain Hippocampus Middle	brain
13	chr12:45804400-45830200	Weak transcription	Brain Germinal Matrix	brain
14	chr12:45806400-45825600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr12:45806800-45826000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
16	chr12:45806800-45829800	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr12:45809600-45824800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
18	chr12:45809600-45826600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr12:45810600-45826000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr12:45810800-45825400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr12:45811600-45826800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr12:45811600-45829400	Weak transcription	Rectal Mucosa Donor 31	rectum
23	chr12:45812200-45825800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
24	chr12:45812200-45826600	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr12:45812600-45832000	Weak transcription	Small Intestine	intestine
26	chr12:45813000-45829600	Weak transcription	Rectal Mucosa Donor 29	rectum
27	chr12:45813200-45825200	Weak transcription	Fetal Brain Female	brain
28	chr12:45813800-45825200	Strong transcription	Dnd41	blood
29	chr12:45813800-45825800	Strong transcription	Adipose Nuclei	Adipose
30	chr12:45814000-45825600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr12:45814200-45824600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr12:45814400-45825600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr12:45814800-45825400	Strong transcription	Placenta	Placenta
34	chr12:45814800-45825600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr12:45814800-45825800	Strong transcription	Fetal Muscle Trunk	muscle
36	chr12:45814800-45825800	Strong transcription	Skeletal Muscle Female	skeletal muscle
37	chr12:45814800-45826000	Strong transcription	Skeletal Muscle Male	skeletal muscle
38	chr12:45816200-45825000	Strong transcription	Primary T cells from cord blood	blood
39	chr12:45816200-45825000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr12:45816200-45825600	Strong transcription	Fetal Muscle Leg	muscle
41	chr12:45816400-45828200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
42	chr12:45817000-45825400	Weak transcription	K562	blood
43	chr12:45817000-45826200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
44	chr12:45817400-45828800	Weak transcription	NHEK	skin
45	chr12:45817800-45829200	Weak transcription	Psoas Muscle	Psoas
46	chr12:45818000-45826400	Weak transcription	Fetal Kidney	kidney
47	chr12:45818000-45828600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
48	chr12:45818400-45825600	Strong transcription	A549	lung
49	chr12:45819000-45825600	Strong transcription	Stomach Smooth Muscle	stomach
50	chr12:45819000-45825800	Strong transcription	Duodenum Smooth Muscle	Duodenum

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