Variant report

Variant	rs11183034
Chromosome Location	chr12:45827507-45827508
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:45826943..45829622-chr12:45831325..45834835,3	MCF-7	breast:

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs10506261	0.90[CEU][hapmap];0.94[EUR][1000 genomes]
rs10506262	0.90[CEU][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes]
rs10785569	0.85[CHD][hapmap]
rs10880779	0.92[EUR][1000 genomes]
rs10880780	0.90[CEU][hapmap];0.92[EUR][1000 genomes]
rs10880781	0.94[CHB][hapmap];0.95[JPT][hapmap];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10880782	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10880783	0.94[EUR][1000 genomes]
rs11182986	0.85[CHD][hapmap]
rs11182988	0.82[CHD][hapmap]
rs11183000	0.90[CEU][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes]
rs11183001	0.92[EUR][1000 genomes]
rs11183004	0.90[CEU][hapmap];0.94[EUR][1000 genomes]
rs11183009	0.90[CEU][hapmap];0.92[EUR][1000 genomes]
rs11183012	0.94[EUR][1000 genomes]
rs11183014	0.92[CHD][hapmap]
rs11183019	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11183023	0.85[CHB][hapmap]
rs11183027	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11183028	0.90[CEU][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes]
rs11183029	0.85[CHB][hapmap];0.92[CHD][hapmap]
rs11183030	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11183040	0.90[EUR][1000 genomes]
rs11536237	0.91[EUR][1000 genomes]
rs11553695	0.85[CHB][hapmap]
rs11611476	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11612092	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11612531	0.90[CEU][hapmap];0.94[EUR][1000 genomes]
rs12230667	0.90[CEU][hapmap];0.92[EUR][1000 genomes]
rs12231032	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12297071	0.85[CHD][hapmap]
rs12578593	0.90[CEU][hapmap];0.92[EUR][1000 genomes]
rs12580984	0.92[EUR][1000 genomes]
rs12580991	0.92[EUR][1000 genomes]
rs12809159	0.82[CHB][hapmap]
rs12809717	0.90[CEU][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12812732	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12813734	0.94[EUR][1000 genomes]
rs12819619	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12829496	0.89[CEU][hapmap];0.94[EUR][1000 genomes]
rs1316280	0.92[EUR][1000 genomes]
rs17095868	0.81[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.88[MEX][hapmap];0.85[MKK][hapmap];0.93[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs17095871	1.00[CEU][hapmap];0.89[CHB][hapmap];0.89[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17095872	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1863549	0.90[CHD][hapmap]
rs1913696	0.90[CHD][hapmap]
rs2081589	0.86[CEU][hapmap];0.94[EUR][1000 genomes]
rs2081590	0.94[EUR][1000 genomes]
rs2162322	0.84[CHB][hapmap]
rs2408260	0.90[CEU][hapmap];0.92[EUR][1000 genomes]
rs34031195	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34470081	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34785109	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35634751	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35754392	0.91[EUR][1000 genomes]
rs35816444	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3803176	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3803178	0.92[CHD][hapmap]
rs3803179	0.85[CHB][hapmap]
rs57911796	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58503970	0.92[EUR][1000 genomes]
rs59893450	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6582546	0.90[CEU][hapmap];0.92[EUR][1000 genomes]
rs7299836	0.94[EUR][1000 genomes]
rs7302251	0.94[EUR][1000 genomes]
rs7302256	0.90[CEU][hapmap];0.94[EUR][1000 genomes]
rs7304126	0.94[EUR][1000 genomes]
rs7308092	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7965912	0.90[CEU][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes]
rs7968063	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7977798	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9788195	0.94[EUR][1000 genomes]
rs9788251	1.00[TSI][hapmap];0.94[EUR][1000 genomes]

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:45780400-45829800	Weak transcription	Brain Anterior Caudate	brain
2	chr12:45792000-45828600	Strong transcription	Monocytes-CD14+_RO01746	blood
3	chr12:45793000-45827600	Strong transcription	Primary monocytes fromperipheralblood	blood
4	chr12:45796400-45829600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr12:45796600-45828400	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr12:45796600-45828600	Weak transcription	Brain Substantia Nigra	brain
7	chr12:45796600-45828800	Weak transcription	Brain Angular Gyrus	brain
8	chr12:45804400-45828000	Weak transcription	Brain Hippocampus Middle	brain
9	chr12:45804400-45830200	Weak transcription	Brain Germinal Matrix	brain
10	chr12:45806800-45829800	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr12:45811600-45829400	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr12:45812600-45832000	Weak transcription	Small Intestine	intestine
13	chr12:45813000-45829600	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr12:45816400-45828200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr12:45817400-45828800	Weak transcription	NHEK	skin
16	chr12:45817800-45829200	Weak transcription	Psoas Muscle	Psoas
17	chr12:45818000-45828600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr12:45819400-45827600	Strong transcription	Liver	Liver
19	chr12:45819600-45830000	Weak transcription	GM12878-XiMat	blood
20	chr12:45820000-45828000	Weak transcription	Primary T helper cells PMA-I stimulated	--
21	chr12:45821200-45829200	Weak transcription	Right Atrium	heart
22	chr12:45821200-45829400	Weak transcription	NHLF	lung
23	chr12:45821200-45829800	Weak transcription	Fetal Heart	heart
24	chr12:45821200-45833000	Weak transcription	NH-A	brain
25	chr12:45822000-45828000	Weak transcription	Cortex derived primary cultured neurospheres	brain
26	chr12:45822200-45828000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr12:45823000-45829000	Weak transcription	Rectal Smooth Muscle	rectum
28	chr12:45823200-45829800	Weak transcription	Fetal Lung	lung
29	chr12:45824200-45829800	Weak transcription	Osteobl	bone
30	chr12:45824200-45832800	Weak transcription	Muscle Satellite Cultured Cells	--
31	chr12:45824600-45829400	Weak transcription	HMEC	breast
32	chr12:45824800-45828400	Weak transcription	Primary neutrophils fromperipheralblood	blood
33	chr12:45824800-45833000	Weak transcription	NHDF-Ad	bronchial
34	chr12:45825400-45830000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
35	chr12:45825600-45828000	Weak transcription	K562	blood
36	chr12:45825600-45828400	Weak transcription	Fetal Intestine Large	intestine
37	chr12:45825600-45828600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr12:45825600-45829200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
39	chr12:45825600-45829200	Weak transcription	Spleen	Spleen
40	chr12:45825600-45829400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr12:45825600-45829800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr12:45825600-45829800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr12:45825600-45830000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr12:45825600-45830000	Weak transcription	Stomach Smooth Muscle	stomach
45	chr12:45825600-45831800	Weak transcription	Lung	lung
46	chr12:45825600-45831800	Weak transcription	Ovary	ovary
47	chr12:45825600-45835800	Weak transcription	Colon Smooth Muscle	Colon
48	chr12:45825800-45829000	Weak transcription	HUVEC	blood vessel
49	chr12:45826000-45827600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr12:45826000-45828600	Weak transcription	Skeletal Muscle Male	skeletal muscle

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