Variant report

Variant	rs10880783
Chromosome Location	chr12:45829719-45829720
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:45815659..45817230-chr12:45827515..45830278,2	MCF-7	breast:
2	chr12:45820246..45822416-chr12:45828146..45831023,2	MCF-7	breast:

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10506261	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10506262	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10880779	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10880780	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10880781	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10880782	0.90[CEU][hapmap];0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11183000	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11183001	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11183004	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11183009	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11183012	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11183019	0.90[CEU][hapmap];0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11183027	0.90[CEU][hapmap];0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11183028	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11183030	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11183034	0.94[EUR][1000 genomes]
rs11183040	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11536237	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11611476	0.90[CEU][hapmap];0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11612092	0.90[CEU][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11612531	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12230667	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12231032	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12314896	0.95[JPT][hapmap]
rs12578593	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12580984	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12580991	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12809717	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12812732	0.90[CEU][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12813734	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12819619	0.90[CEU][hapmap];0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12829496	1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1316280	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17095871	0.90[CEU][hapmap];0.94[EUR][1000 genomes]
rs17095872	0.90[CEU][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2081589	1.00[CEU][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2081590	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2408260	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34031195	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34470081	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34785109	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35634751	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35754392	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35816444	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3803176	0.90[CEU][hapmap];0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs57911796	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs58503970	0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs59893450	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6582546	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7299836	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7302251	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7302256	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7304126	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7308092	0.90[CEU][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7313617	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7965912	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7968063	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7977798	0.90[CEU][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9788195	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9788251	0.83[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:45780400-45829800	Weak transcription	Brain Anterior Caudate	brain
2	chr12:45804400-45830200	Weak transcription	Brain Germinal Matrix	brain
3	chr12:45806800-45829800	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr12:45812600-45832000	Weak transcription	Small Intestine	intestine
5	chr12:45819600-45830000	Weak transcription	GM12878-XiMat	blood
6	chr12:45821200-45829800	Weak transcription	Fetal Heart	heart
7	chr12:45821200-45833000	Weak transcription	NH-A	brain
8	chr12:45823200-45829800	Weak transcription	Fetal Lung	lung
9	chr12:45824200-45829800	Weak transcription	Osteobl	bone
10	chr12:45824200-45832800	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr12:45824800-45833000	Weak transcription	NHDF-Ad	bronchial
12	chr12:45825400-45830000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr12:45825600-45829800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr12:45825600-45829800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr12:45825600-45830000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr12:45825600-45830000	Weak transcription	Stomach Smooth Muscle	stomach
17	chr12:45825600-45831800	Weak transcription	Lung	lung
18	chr12:45825600-45831800	Weak transcription	Ovary	ovary
19	chr12:45825600-45835800	Weak transcription	Colon Smooth Muscle	Colon
20	chr12:45826200-45830000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr12:45826200-45832800	Weak transcription	HSMM	muscle
22	chr12:45826400-45830400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
23	chr12:45827200-45829800	Weak transcription	Right Ventricle	heart
24	chr12:45827600-45830000	Weak transcription	Liver	Liver
25	chr12:45827600-45830200	Weak transcription	Fetal Stomach	stomach
26	chr12:45827600-45830600	Weak transcription	Gastric	stomach
27	chr12:45827600-45832800	Weak transcription	Pancreas	Pancrea
28	chr12:45827600-45834800	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr12:45827600-45842800	Weak transcription	Aorta	Aorta
30	chr12:45828000-45830000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr12:45828000-45830000	Enhancers	iPS-18 Cell Line	embryonic stem cell
32	chr12:45828000-45830000	Enhancers	Cortex derived primary cultured neurospheres	brain
33	chr12:45828000-45830000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr12:45828000-45830200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr12:45828000-45841800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
36	chr12:45828200-45829800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr12:45828200-45830200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr12:45828200-45830400	Weak transcription	Primary B cells from cord blood	blood
39	chr12:45828200-45831000	Weak transcription	Primary T cells from cord blood	blood
40	chr12:45828400-45830200	Enhancers	Brain Inferior Temporal Lobe	brain
41	chr12:45828400-45830400	Weak transcription	Fetal Muscle Trunk	muscle
42	chr12:45828400-45835400	Weak transcription	Adipose Nuclei	Adipose
43	chr12:45828600-45829800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr12:45828600-45830200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr12:45828600-45830200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
46	chr12:45828600-45830200	Enhancers	Brain Substantia Nigra	brain
47	chr12:45828600-45830400	Enhancers	Skeletal Muscle Male	skeletal muscle
48	chr12:45828600-45830600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr12:45828800-45830000	Enhancers	Primary monocytes fromperipheralblood	blood
50	chr12:45828800-45830000	Enhancers	Brain Cingulate Gyrus	brain

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