Variant report

Variant	rs3803177
Chromosome Location	chr12:45824702-45824703
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:45821285..45822837-chr12:45823323..45825072,2	K562	blood:
2	chr12:45816584..45818439-chr12:45823232..45825090,2	K562	blood:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10506262	0.89[YRI][hapmap]
rs10736025	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs10880782	0.89[YRI][hapmap]
rs11183019	0.90[YRI][hapmap]
rs11611476	0.90[YRI][hapmap]
rs12819619	0.90[YRI][hapmap]
rs17095779	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17095781	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17095835	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17095858	1.00[CEU][hapmap];0.83[JPT][hapmap];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17095860	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17095861	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17095862	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17095884	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17095890	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17095914	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17121366	0.85[ASN][1000 genomes]
rs1913694	0.81[AMR][1000 genomes]
rs3803176	0.90[YRI][hapmap]
rs41338444	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4512918	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs57056104	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57160874	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57455310	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58028140	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs58152224	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs58213849	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs58940403	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60794282	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61276164	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61351713	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61484865	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7296058	1.00[CEU][hapmap]
rs74081808	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74081818	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74081821	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74081827	0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7965912	0.89[YRI][hapmap]

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:45780400-45829800	Weak transcription	Brain Anterior Caudate	brain
2	chr12:45783400-45826400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr12:45786600-45827000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr12:45792000-45828600	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr12:45792600-45827000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr12:45793000-45827600	Strong transcription	Primary monocytes fromperipheralblood	blood
7	chr12:45795600-45825600	Strong transcription	Fetal Intestine Large	intestine
8	chr12:45796400-45829600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr12:45796600-45828400	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr12:45796600-45828600	Weak transcription	Brain Substantia Nigra	brain
11	chr12:45796600-45828800	Weak transcription	Brain Angular Gyrus	brain
12	chr12:45804400-45828000	Weak transcription	Brain Hippocampus Middle	brain
13	chr12:45804400-45830200	Weak transcription	Brain Germinal Matrix	brain
14	chr12:45806400-45825600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr12:45806800-45826000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
16	chr12:45806800-45829800	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr12:45809600-45824800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
18	chr12:45809600-45826600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr12:45810600-45826000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr12:45810800-45825400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr12:45811600-45826800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr12:45811600-45829400	Weak transcription	Rectal Mucosa Donor 31	rectum
23	chr12:45812200-45825800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
24	chr12:45812200-45826600	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr12:45812600-45832000	Weak transcription	Small Intestine	intestine
26	chr12:45813000-45829600	Weak transcription	Rectal Mucosa Donor 29	rectum
27	chr12:45813200-45825200	Weak transcription	Fetal Brain Female	brain
28	chr12:45813800-45825200	Strong transcription	Dnd41	blood
29	chr12:45813800-45825800	Strong transcription	Adipose Nuclei	Adipose
30	chr12:45814000-45825600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr12:45814400-45825600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr12:45814800-45825400	Strong transcription	Placenta	Placenta
33	chr12:45814800-45825600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr12:45814800-45825800	Strong transcription	Fetal Muscle Trunk	muscle
35	chr12:45814800-45825800	Strong transcription	Skeletal Muscle Female	skeletal muscle
36	chr12:45814800-45826000	Strong transcription	Skeletal Muscle Male	skeletal muscle
37	chr12:45816200-45825000	Strong transcription	Primary T cells from cord blood	blood
38	chr12:45816200-45825000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr12:45816200-45825600	Strong transcription	Fetal Muscle Leg	muscle
40	chr12:45816400-45828200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
41	chr12:45817000-45825400	Weak transcription	K562	blood
42	chr12:45817000-45826200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
43	chr12:45817400-45828800	Weak transcription	NHEK	skin
44	chr12:45817800-45829200	Weak transcription	Psoas Muscle	Psoas
45	chr12:45818000-45826400	Weak transcription	Fetal Kidney	kidney
46	chr12:45818000-45828600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
47	chr12:45818400-45825600	Strong transcription	A549	lung
48	chr12:45819000-45825600	Strong transcription	Stomach Smooth Muscle	stomach
49	chr12:45819000-45825800	Strong transcription	Duodenum Smooth Muscle	Duodenum
50	chr12:45819400-45825600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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