Variant report

Variant	rs1913694
Chromosome Location	chr12:45837724-45837725
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	E2F4	chr12:45837587-45838103	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
ENSG00000257368	TF binding region

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs12321278	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12578337	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12578601	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12578638	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17095830	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17095855	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17095914	0.85[AMR][1000 genomes]
rs34756223	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3803177	0.81[AMR][1000 genomes]
rs4583038	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs56151528	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs57121130	1.00[EUR][1000 genomes]
rs57985291	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs58282976	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs58674935	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs58940403	0.81[AMR][1000 genomes]
rs59166276	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs59348316	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs59604789	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs60452259	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs60688397	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7132433	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7138332	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7138476	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7296058	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7299292	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7300016	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7302635	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7312150	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs74081818	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs74081821	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs74081827	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs9788104	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv972984	chr12:45831852-45839014	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:45827600-45842800	Weak transcription	Aorta	Aorta
2	chr12:45828000-45841800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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