Variant report

Variant	rs74081827
Chromosome Location	chr12:45833755-45833756
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs17095884	0.83[ASN][1000 genomes]
rs17095890	0.83[ASN][1000 genomes]
rs17095914	0.90[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1913694	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs3803177	0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs41338444	0.83[ASN][1000 genomes]
rs58940403	0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs61484865	0.83[ASN][1000 genomes]
rs74081808	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs74081818	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs74081821	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv972984	chr12:45831852-45839014	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:45825600-45835800	Weak transcription	Colon Smooth Muscle	Colon
2	chr12:45827600-45834800	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr12:45827600-45842800	Weak transcription	Aorta	Aorta
4	chr12:45828000-45841800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr12:45828400-45835400	Weak transcription	Adipose Nuclei	Adipose
6	chr12:45832800-45833800	Enhancers	HSMM	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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