Variant report

Variant	rs17095914
Chromosome Location	chr12:45826457-45826458
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10736025	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs17095779	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17095781	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17095835	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17095858	1.00[CEU][hapmap];0.83[JPT][hapmap];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17095860	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17095861	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17095862	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17095872	0.88[YRI][hapmap]
rs17095884	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17095890	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17121366	0.85[ASN][1000 genomes]
rs1913694	0.85[AMR][1000 genomes]
rs3803177	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41338444	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4512918	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs57056104	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57160874	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57455310	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58028140	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs58152224	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs58213849	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs58940403	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60794282	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61276164	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61351713	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61484865	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7296058	1.00[CEU][hapmap]
rs74081808	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74081818	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74081821	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74081827	0.90[AMR][1000 genomes];0.83[ASN][1000 genomes]

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:45780400-45829800	Weak transcription	Brain Anterior Caudate	brain
2	chr12:45786600-45827000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr12:45792000-45828600	Strong transcription	Monocytes-CD14+_RO01746	blood
4	chr12:45792600-45827000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr12:45793000-45827600	Strong transcription	Primary monocytes fromperipheralblood	blood
6	chr12:45796400-45829600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr12:45796600-45828400	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr12:45796600-45828600	Weak transcription	Brain Substantia Nigra	brain
9	chr12:45796600-45828800	Weak transcription	Brain Angular Gyrus	brain
10	chr12:45804400-45828000	Weak transcription	Brain Hippocampus Middle	brain
11	chr12:45804400-45830200	Weak transcription	Brain Germinal Matrix	brain
12	chr12:45806800-45829800	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr12:45809600-45826600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr12:45811600-45826800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr12:45811600-45829400	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr12:45812200-45826600	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr12:45812600-45832000	Weak transcription	Small Intestine	intestine
18	chr12:45813000-45829600	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr12:45816400-45828200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr12:45817400-45828800	Weak transcription	NHEK	skin
21	chr12:45817800-45829200	Weak transcription	Psoas Muscle	Psoas
22	chr12:45818000-45828600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr12:45819400-45827600	Strong transcription	Liver	Liver
24	chr12:45819600-45830000	Weak transcription	GM12878-XiMat	blood
25	chr12:45820000-45826600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr12:45820000-45828000	Weak transcription	Primary T helper cells PMA-I stimulated	--
27	chr12:45820600-45827000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr12:45821000-45826600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
29	chr12:45821200-45829200	Weak transcription	Right Atrium	heart
30	chr12:45821200-45829400	Weak transcription	NHLF	lung
31	chr12:45821200-45829800	Weak transcription	Fetal Heart	heart
32	chr12:45821200-45833000	Weak transcription	NH-A	brain
33	chr12:45822000-45826600	Weak transcription	H1 Cell Line	embryonic stem cell
34	chr12:45822000-45828000	Weak transcription	Cortex derived primary cultured neurospheres	brain
35	chr12:45822200-45826800	Weak transcription	Primary B cells from peripheral blood	blood
36	chr12:45822200-45828000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr12:45822600-45827000	Weak transcription	HepG2	liver
38	chr12:45822800-45826600	Weak transcription	HUES48 Cell Line	embryonic stem cell
39	chr12:45823000-45826800	Weak transcription	HSMMtube	muscle
40	chr12:45823000-45829000	Weak transcription	Rectal Smooth Muscle	rectum
41	chr12:45823200-45829800	Weak transcription	Fetal Lung	lung
42	chr12:45824200-45829800	Weak transcription	Osteobl	bone
43	chr12:45824200-45832800	Weak transcription	Muscle Satellite Cultured Cells	--
44	chr12:45824400-45826600	Weak transcription	Placenta Amnion	Placenta Amnion
45	chr12:45824600-45827000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr12:45824600-45829400	Weak transcription	HMEC	breast
47	chr12:45824800-45826800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr12:45824800-45828400	Weak transcription	Primary neutrophils fromperipheralblood	blood
49	chr12:45824800-45833000	Weak transcription	NHDF-Ad	bronchial
50	chr12:45825000-45826600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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