Variant report

Variant	rs4471506
Chromosome Location	chr12:82738459-82738460
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:82738128..82740375-chr12:82744468..82746353,2	MCF-7	breast:
2	chr12:82738205..82740436-chr12:82743409..82745352,2	MCF-7	breast:
3	chr12:82733369..82734930-chr12:82737197..82739926,2	K562	blood:

Extended variants
information (count: 102 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:95)

rs_ID	r²[population]
rs10219540	0.84[EUR][1000 genomes]
rs10431469	1.00[CEU][hapmap];0.82[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10732677	0.84[EUR][1000 genomes]
rs10735451	0.92[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10735454	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs10735455	0.84[EUR][1000 genomes]
rs10746241	1.00[CEU][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10746243	0.84[EUR][1000 genomes]
rs10746247	0.84[EUR][1000 genomes]
rs10746248	0.84[EUR][1000 genomes]
rs10746250	0.84[EUR][1000 genomes]
rs10778891	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10778894	0.84[EUR][1000 genomes]
rs10778897	0.84[EUR][1000 genomes]
rs10778903	0.84[EUR][1000 genomes]
rs10778904	0.84[EUR][1000 genomes]
rs10778905	0.84[EUR][1000 genomes]
rs10778908	0.81[EUR][1000 genomes]
rs10862481	0.84[EUR][1000 genomes]
rs10862484	0.84[EUR][1000 genomes]
rs10862485	0.84[EUR][1000 genomes]
rs10862486	0.84[EUR][1000 genomes]
rs17009470	0.84[EUR][1000 genomes]
rs17719033	0.84[EUR][1000 genomes]
rs17773980	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs17775000	0.84[EUR][1000 genomes]
rs17775447	0.84[EUR][1000 genomes]
rs17775501	0.84[EUR][1000 genomes]
rs2068633	1.00[CEU][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2254688	0.84[EUR][1000 genomes]
rs2401026	0.84[EUR][1000 genomes]
rs2401027	0.81[YRI][hapmap];0.84[EUR][1000 genomes]
rs2401032	0.84[EUR][1000 genomes]
rs2401036	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2401039	0.84[EUR][1000 genomes]
rs2401040	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2642015	0.84[EUR][1000 genomes]
rs2642017	0.84[EUR][1000 genomes]
rs2642018	0.84[EUR][1000 genomes]
rs2642019	0.84[EUR][1000 genomes]
rs2717459	0.84[EUR][1000 genomes]
rs2731286	0.84[EUR][1000 genomes]
rs2731295	1.00[MEX][hapmap]
rs2731297	0.82[EUR][1000 genomes]
rs28626834	0.84[EUR][1000 genomes]
rs2895910	0.84[EUR][1000 genomes]
rs2895911	0.84[EUR][1000 genomes]
rs2895912	0.84[EUR][1000 genomes]
rs2895915	0.84[EUR][1000 genomes]
rs4143187	0.84[EUR][1000 genomes]
rs4143190	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4242864	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs4242870	1.00[CEU][hapmap];0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4257045	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs4284465	0.84[EUR][1000 genomes]
rs4296098	0.84[EUR][1000 genomes]
rs4334093	0.84[EUR][1000 genomes]
rs4343090	0.84[EUR][1000 genomes]
rs4356298	0.84[EUR][1000 genomes]
rs4370996	0.84[EUR][1000 genomes]
rs4387422	0.84[EUR][1000 genomes]
rs4399377	0.84[EUR][1000 genomes]
rs4417379	0.84[EUR][1000 genomes]
rs4460874	0.84[EUR][1000 genomes]
rs4483662	1.00[CEU][hapmap];0.85[LWK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4505128	0.84[EUR][1000 genomes]
rs4517594	0.84[EUR][1000 genomes]
rs4540892	0.84[EUR][1000 genomes]
rs4553425	0.84[EUR][1000 genomes]
rs4587790	0.84[EUR][1000 genomes]
rs4628747	0.84[EUR][1000 genomes]
rs4882379	0.84[EUR][1000 genomes]
rs4882386	0.84[EUR][1000 genomes]
rs4882389	0.84[EUR][1000 genomes]
rs4882390	0.84[EUR][1000 genomes]
rs4882435	0.84[EUR][1000 genomes]
rs4882438	0.84[EUR][1000 genomes]
rs4882541	0.84[EUR][1000 genomes]
rs55720165	0.93[EUR][1000 genomes]
rs55887136	0.84[EUR][1000 genomes]
rs56337649	0.84[EUR][1000 genomes]
rs6539669	0.84[EUR][1000 genomes]
rs7294771	0.84[EUR][1000 genomes]
rs7294903	0.84[EUR][1000 genomes]
rs7297164	0.84[EUR][1000 genomes]
rs7299616	0.84[EUR][1000 genomes]
rs7309442	0.84[EUR][1000 genomes]
rs7313975	0.84[EUR][1000 genomes]
rs7315834	1.00[CEU][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7316500	0.84[EUR][1000 genomes]
rs7954460	0.84[EUR][1000 genomes]
rs7969953	0.84[EUR][1000 genomes]
rs7977443	0.84[EUR][1000 genomes]
rs8181688	0.84[EUR][1000 genomes]
rs8181705	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv559539	chr12:82280797-82896218	Genic enhancers Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1041954	chr12:82314981-83008609	Enhancers Active TSS Genic enhancers Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv541550	chr12:82314981-83008609	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv832471	chr12:82578953-82755360	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv1053093	chr12:82645292-83287809	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
6	nsv541551	chr12:82645292-83287809	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
7	nsv559541	chr12:82715210-83108395	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:82734800-82742200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr12:82735400-82745200	Weak transcription	Brain Cingulate Gyrus	brain
3	chr12:82736800-82742200	Weak transcription	Brain Angular Gyrus	brain
4	chr12:82736800-82745000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr12:82737800-82741200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr12:82738400-82745200	Weak transcription	Primary hematopoietic stem cells	blood

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