Variant report

Variant	rs4475604
Chromosome Location	chr9:18128445-18128446
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10511647	0.84[AMR][1000 genomes]
rs10738501	0.87[AMR][1000 genomes]
rs10756937	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs10756938	0.84[AMR][1000 genomes]
rs10756939	0.88[AMR][1000 genomes]
rs10756940	0.84[AMR][1000 genomes]
rs10756941	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs10756944	0.93[EUR][1000 genomes]
rs10810906	0.83[AMR][1000 genomes]
rs10810908	0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs10810909	0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10963459	0.90[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs10963460	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10963466	0.84[AMR][1000 genomes]
rs10963469	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs10963470	0.82[AMR][1000 genomes]
rs1331094	0.80[AMR][1000 genomes]
rs1360412	0.88[AMR][1000 genomes]
rs2067719	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2156683	0.83[AMR][1000 genomes]
rs2156684	0.83[AMR][1000 genomes]
rs2187453	0.83[AMR][1000 genomes]
rs2187454	0.83[AMR][1000 genomes]
rs4322098	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4364725	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4571825	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs7031711	0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7850977	0.87[AMR][1000 genomes]
rs7866197	0.87[AMR][1000 genomes]
rs956323	0.88[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021605	chr9:18002205-18271109	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv466280	chr9:18033944-18166112	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv471288	chr9:18033944-18166112	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv613723	chr9:18033944-18166112	Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv892679	chr9:18044802-18226609	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv892680	chr9:18089614-18267185	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv892681	chr9:18127068-18250459	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:18120600-18129600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr9:18126400-18130600	Enhancers	Colon Smooth Muscle	Colon
3	chr9:18126600-18129200	Enhancers	Stomach Smooth Muscle	stomach
4	chr9:18127000-18128600	Enhancers	Duodenum Smooth Muscle	Duodenum
5	chr9:18127000-18128600	Enhancers	Ovary	ovary
6	chr9:18127000-18128600	Enhancers	Rectal Smooth Muscle	rectum
7	chr9:18127200-18129800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr9:18127600-18129800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr9:18127800-18138400	Weak transcription	Aorta	Aorta
10	chr9:18128400-18128600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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