Variant report
Variant | rs2156684 |
---|---|
Chromosome Location | chr9:18130574-18130575 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10511647 | 0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs10738501 | 0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs10738502 | 0.86[AMR][1000 genomes];0.92[ASN][1000 genomes] |
rs10756937 | 0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs10756938 | 0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs10756939 | 0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs10756940 | 0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[ASN][1000 genomes] |
rs10756941 | 0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs10810906 | 0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs10810908 | 0.94[AMR][1000 genomes];0.99[EUR][1000 genomes] |
rs10810909 | 0.93[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs10963459 | 0.88[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rs10963460 | 0.90[AMR][1000 genomes];0.99[EUR][1000 genomes] |
rs10963465 | 0.88[AMR][1000 genomes];0.96[ASN][1000 genomes] |
rs10963466 | 0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs10963469 | 0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs10963470 | 0.88[AMR][1000 genomes];0.94[ASN][1000 genomes] |
rs1331090 | 0.83[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rs1331094 | 0.90[AMR][1000 genomes];0.95[ASN][1000 genomes] |
rs1360412 | 0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs2067719 | 0.90[AMR][1000 genomes];0.99[EUR][1000 genomes] |
rs2156683 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs2187453 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs2187454 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs4322098 | 0.90[AMR][1000 genomes];0.99[EUR][1000 genomes] |
rs4364725 | 0.90[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs4475604 | 0.83[AMR][1000 genomes] |
rs4571825 | 0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs4961456 | 0.97[EUR][1000 genomes] |
rs7031711 | 0.94[AMR][1000 genomes];0.99[EUR][1000 genomes] |
rs7850977 | 0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs7866197 | 0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs956323 | 0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1021605 | chr9:18002205-18271109 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
2 | nsv466280 | chr9:18033944-18166112 | Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers | Chromatin interactive region | n/a | inside rSNPs | diseases |
3 | nsv471288 | chr9:18033944-18166112 | Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh | Chromatin interactive region | n/a | inside rSNPs | diseases |
4 | nsv613723 | chr9:18033944-18166112 | Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
5 | nsv892679 | chr9:18044802-18226609 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh | Chromatin interactive region | n/a | inside rSNPs | diseases |
6 | nsv892680 | chr9:18089614-18267185 | Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
7 | nsv892681 | chr9:18127068-18250459 | Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr9:18126400-18130600 | Enhancers | Colon Smooth Muscle | Colon |
2 | chr9:18127800-18138400 | Weak transcription | Aorta | Aorta |
3 | chr9:18128600-18133600 | Weak transcription | Rectal Smooth Muscle | rectum |
4 | chr9:18129600-18131000 | Enhancers | Stomach Smooth Muscle | stomach |
5 | chr9:18130000-18135800 | Weak transcription | Duodenum Smooth Muscle | Duodenum |