Variant report

Variant	rs4961456
Chromosome Location	chr9:18144661-18144662
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10511647	0.98[EUR][1000 genomes]
rs10738501	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10756937	0.96[EUR][1000 genomes]
rs10756938	0.97[EUR][1000 genomes]
rs10756939	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10756941	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10756944	0.80[AMR][1000 genomes]
rs10810906	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10810908	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10810909	0.98[EUR][1000 genomes]
rs10810913	0.83[AMR][1000 genomes]
rs10963459	0.94[EUR][1000 genomes]
rs10963460	0.98[EUR][1000 genomes]
rs10963466	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10963469	0.98[EUR][1000 genomes]
rs1331090	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1331091	0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1331092	0.85[AMR][1000 genomes]
rs1360412	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1944748	0.81[AMR][1000 genomes]
rs2067719	0.97[EUR][1000 genomes]
rs2156683	0.97[EUR][1000 genomes]
rs2156684	0.97[EUR][1000 genomes]
rs2187453	0.96[EUR][1000 genomes]
rs2187454	0.96[EUR][1000 genomes]
rs3948855	0.81[AMR][1000 genomes]
rs4322098	0.97[EUR][1000 genomes]
rs4364725	0.96[EUR][1000 genomes]
rs4571825	0.97[EUR][1000 genomes]
rs4961457	0.86[AMR][1000 genomes]
rs7031711	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7850977	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7866197	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs956323	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs983230	0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021605	chr9:18002205-18271109	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv466280	chr9:18033944-18166112	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv471288	chr9:18033944-18166112	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv613723	chr9:18033944-18166112	Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv892679	chr9:18044802-18226609	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv892680	chr9:18089614-18267185	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv892681	chr9:18127068-18250459	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:18141200-18145400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr9:18143600-18144800	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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