Variant report
| Variant | rs4961457 |
|---|---|
| Chromosome Location | chr9:18150173-18150174 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr9:18149518..18150319-chr9:18207841..18208492,3 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:13)
| rs_ID | r2[population] |
|---|---|
| rs10738502 | 0.81[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs10810913 | 0.95[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs10963465 | 0.94[EUR][1000 genomes] |
| rs10963470 | 0.94[EUR][1000 genomes] |
| rs1331090 | 0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs1331091 | 0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs1331092 | 0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs1331094 | 0.94[EUR][1000 genomes] |
| rs1944748 | 0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs3948855 | 0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs4961456 | 0.86[AMR][1000 genomes] |
| rs7027648 | 0.80[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs983230 | 0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1021605 | chr9:18002205-18271109 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv466280 | chr9:18033944-18166112 | Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 3 | nsv471288 | chr9:18033944-18166112 | Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 4 | nsv613723 | chr9:18033944-18166112 | Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 5 | nsv892679 | chr9:18044802-18226609 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 6 | nsv892680 | chr9:18089614-18267185 | Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 7 | nsv892681 | chr9:18127068-18250459 | Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr9:18149400-18150200 | Enhancers | Fetal Heart | heart |
