Variant report

Variant	rs4486199
Chromosome Location	chr8:35730549-35730550
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1595206	1.00[AMR][1000 genomes]
rs16884303	1.00[AMR][1000 genomes]
rs16884429	1.00[AMR][1000 genomes]
rs4626589	1.00[AMR][1000 genomes]
rs56806566	1.00[AMR][1000 genomes]
rs59231510	1.00[AMR][1000 genomes]
rs6987158	1.00[AMR][1000 genomes]
rs7005299	1.00[AMR][1000 genomes]
rs7012359	1.00[AMR][1000 genomes]
rs73578206	1.00[AMR][1000 genomes]
rs73578222	1.00[AMR][1000 genomes]
rs73578251	1.00[AMR][1000 genomes]
rs7837415	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533420	chr8:35358115-36227536	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1032540	chr8:35565491-35949132	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1024552	chr8:35655964-36210907	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv539548	chr8:35655964-36210907	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:35725600-35733200	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr8:35726600-35733000	Weak transcription	Right Atrium	heart
3	chr8:35727400-35731200	Weak transcription	Fetal Muscle Leg	muscle
4	chr8:35727400-35731400	Weak transcription	Fetal Muscle Trunk	muscle
5	chr8:35727400-35732600	Weak transcription	Adipose Nuclei	Adipose
6	chr8:35727400-35733400	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr8:35728400-35730600	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr8:35729400-35730800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr8:35729400-35731200	Enhancers	Muscle Satellite Cultured Cells	--
10	chr8:35729400-35731200	Enhancers	Fetal Intestine Small	intestine
11	chr8:35729400-35732000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr8:35729400-35732000	Enhancers	Fetal Intestine Large	intestine
13	chr8:35729400-35732000	Active TSS	Pancreatic Islets	Pancreatic Islet
14	chr8:35729600-35730600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr8:35729600-35731200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr8:35729600-35731200	Enhancers	HMEC	breast
17	chr8:35729600-35731400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr8:35729600-35731400	Enhancers	Fetal Lung	lung
19	chr8:35729600-35731600	Enhancers	Primary hematopoietic stem cells short term culture	blood
20	chr8:35729600-35732000	Enhancers	Fetal Heart	heart
21	chr8:35729800-35730800	Enhancers	Colon Smooth Muscle	Colon
22	chr8:35729800-35731600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr8:35729800-35731800	Enhancers	Cortex derived primary cultured neurospheres	brain
24	chr8:35730000-35731000	Weak transcription	Pancreas	Pancrea
25	chr8:35730000-35731400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr8:35730000-35731600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr8:35730200-35730600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr8:35730200-35730800	Enhancers	iPS-20b Cell Line	embryonic stem cell
29	chr8:35730200-35732000	Enhancers	iPS-18 Cell Line	embryonic stem cell

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