Variant report

Variant	rs59231510
Chromosome Location	chr8:35720560-35720561
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1595206	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16884303	1.00[AMR][1000 genomes]
rs16884429	1.00[AMR][1000 genomes]
rs4486199	1.00[AMR][1000 genomes]
rs4626589	1.00[AMR][1000 genomes]
rs56806566	1.00[AMR][1000 genomes]
rs6987158	1.00[AMR][1000 genomes]
rs7005299	1.00[AMR][1000 genomes]
rs7012359	1.00[AMR][1000 genomes]
rs73578206	1.00[AMR][1000 genomes]
rs73578222	1.00[AMR][1000 genomes]
rs73578251	1.00[AMR][1000 genomes]
rs7837415	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533420	chr8:35358115-36227536	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1032540	chr8:35565491-35949132	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1024552	chr8:35655964-36210907	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv539548	chr8:35655964-36210907	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:35718800-35721600	Enhancers	iPS-20b Cell Line	embryonic stem cell
2	chr8:35719000-35722000	Enhancers	HSMMtube	muscle
3	chr8:35719200-35721200	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr8:35719400-35720800	Weak transcription	Fetal Brain Female	brain
5	chr8:35719400-35721200	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr8:35719400-35721600	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr8:35719600-35721600	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr8:35719800-35720800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr8:35719800-35721200	Enhancers	H1 Cell Line	embryonic stem cell
10	chr8:35719800-35721400	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr8:35719800-35722000	Enhancers	Fetal Muscle Leg	muscle
12	chr8:35719800-35724800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr8:35720200-35723800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr8:35720200-35724600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr8:35720200-35729400	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr8:35720400-35720800	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr8:35720400-35724000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
18	chr8:35720400-35724800	Weak transcription	Fetal Stomach	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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