Variant report

Variant	rs4486425
Chromosome Location	chr1:67460791-67460792
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:67390720..67392859-chr1:67459230..67461663,2	K562	blood:
2	chr1:67455721..67458075-chr1:67458124..67460916,2	K562	blood:

Extended variants
information (count: 87 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:87)

rs_ID	r²[population]
rs10749766	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10789219	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10889651	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1118392	0.91[CEU][hapmap];0.81[GIH][hapmap];0.90[JPT][hapmap];0.82[TSI][hapmap]
rs11208971	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11208973	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11208974	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11208979	0.90[JPT][hapmap]
rs1121824	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12041926	0.90[JPT][hapmap]
rs12044278	0.90[JPT][hapmap]
rs12131222	0.90[JPT][hapmap]
rs12137403	0.90[JPT][hapmap]
rs12562761	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12742428	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1535365	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1570838	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17497828	0.90[JPT][hapmap]
rs1925408	0.90[JPT][hapmap]
rs1925409	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.95[TSI][hapmap];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1925410	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];0.88[MEX][hapmap];0.80[MKK][hapmap];0.95[TSI][hapmap];0.95[YRI][hapmap];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1925411	0.90[JPT][hapmap]
rs1925413	0.90[JPT][hapmap]
rs2025608	0.90[JPT][hapmap]
rs2065000	0.90[JPT][hapmap]
rs2065001	0.90[JPT][hapmap]
rs2065002	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2182143	0.90[JPT][hapmap]
rs2755241	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2755242	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2755243	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2755244	0.90[JPT][hapmap]
rs2755245	0.90[JPT][hapmap]
rs2755246	0.90[JPT][hapmap]
rs2755247	0.94[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2755250	0.90[JPT][hapmap]
rs2755251	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2755253	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];0.91[ASN][1000 genomes]
rs2755254	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2755266	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2755270	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2755271	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2815349	0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2815351	0.90[JPT][hapmap]
rs2815355	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2815359	0.88[JPT][hapmap]
rs2815360	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2815361	0.89[JPT][hapmap]
rs2815362	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2815363	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2815364	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2815365	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2815366	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2815367	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2815368	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2815370	0.90[JPT][hapmap]
rs2815371	0.90[JPT][hapmap]
rs2815374	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2985795	0.90[JPT][hapmap]
rs2985797	0.90[JPT][hapmap]
rs2985818	0.90[JPT][hapmap]
rs2985821	0.90[JPT][hapmap]
rs2985822	0.90[JPT][hapmap]
rs2985824	0.90[JPT][hapmap]
rs2985825	0.90[JPT][hapmap]
rs2985826	0.90[JPT][hapmap]
rs3008848	0.90[JPT][hapmap]
rs3008853	0.90[JPT][hapmap]
rs3008854	0.90[JPT][hapmap]
rs3008855	0.90[JPT][hapmap]
rs3008858	0.90[JPT][hapmap]
rs3008871	0.81[JPT][hapmap]
rs3008873	0.81[JPT][hapmap]
rs3008892	0.90[JPT][hapmap]
rs3736905	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3929738	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4581250	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4582760	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4620509	0.90[JPT][hapmap]
rs4655658	0.90[JPT][hapmap]
rs4655660	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4655661	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4655662	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4655663	0.90[JPT][hapmap]
rs6657065	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6673462	0.90[JPT][hapmap]
rs912797	0.90[JPT][hapmap]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs4486425	SLC35D1	Cis_1M	lymphoblastoid	RTeQTL
rs4486425	MIER1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:67400600-67466600	Weak transcription	Aorta	Aorta
2	chr1:67414600-67462000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr1:67417000-67462000	Weak transcription	Right Ventricle	heart
4	chr1:67420600-67467000	Weak transcription	Gastric	stomach
5	chr1:67432000-67465600	Weak transcription	Pancreas	Pancrea
6	chr1:67432000-67468600	Weak transcription	Lung	lung
7	chr1:67441600-67485200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr1:67443400-67466800	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr1:67445400-67483800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr1:67447200-67467400	Weak transcription	Stomach Mucosa	stomach
11	chr1:67447600-67466200	Weak transcription	Rectal Smooth Muscle	rectum
12	chr1:67447600-67466600	Weak transcription	Psoas Muscle	Psoas
13	chr1:67447600-67470200	Strong transcription	Rectal Mucosa Donor 29	rectum
14	chr1:67448000-67470800	Weak transcription	Brain Angular Gyrus	brain
15	chr1:67448400-67461600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
16	chr1:67448800-67462000	Weak transcription	NHEK	skin
17	chr1:67448800-67466800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr1:67448800-67468600	Weak transcription	HSMMtube	muscle
19	chr1:67448800-67470800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr1:67448800-67484200	Weak transcription	Brain Cingulate Gyrus	brain
21	chr1:67449200-67467400	Weak transcription	Fetal Brain Female	brain
22	chr1:67449400-67467000	Weak transcription	K562	blood
23	chr1:67449400-67501800	Weak transcription	Placenta Amnion	Placenta Amnion
24	chr1:67449800-67475600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr1:67450600-67461400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
26	chr1:67450600-67461600	Weak transcription	Brain Substantia Nigra	brain
27	chr1:67450600-67464600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
28	chr1:67450600-67485200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr1:67450800-67461600	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr1:67450800-67470600	Weak transcription	Brain Anterior Caudate	brain
31	chr1:67451000-67467600	Weak transcription	Brain Hippocampus Middle	brain
32	chr1:67451200-67461400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
33	chr1:67451200-67506200	Weak transcription	Hela-S3	cervix
34	chr1:67452400-67461600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
35	chr1:67452400-67468400	Weak transcription	NHLF	lung
36	chr1:67452600-67461600	Weak transcription	HepG2	liver
37	chr1:67452600-67462400	Weak transcription	A549	lung
38	chr1:67452800-67471200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
39	chr1:67453000-67464600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
40	chr1:67453200-67473200	Weak transcription	Colonic Mucosa	Colon
41	chr1:67453200-67484000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
42	chr1:67454000-67463800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr1:67454800-67461600	Weak transcription	Primary B cells from peripheral blood	blood
44	chr1:67454800-67483200	Weak transcription	HUES6 Cell Line	embryonic stem cell
45	chr1:67454800-67484200	Weak transcription	NHDF-Ad	bronchial
46	chr1:67455000-67461600	Weak transcription	Primary T helper cells fromperipheralblood	blood
47	chr1:67455000-67467000	Weak transcription	Fetal Kidney	kidney
48	chr1:67455000-67484000	Weak transcription	HUES64 Cell Line	embryonic stem cell
49	chr1:67455000-67484200	Weak transcription	GM12878-XiMat	blood
50	chr1:67455200-67461800	Weak transcription	Dnd41	blood

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