Variant report

Variant rs3008854
Chromosome Location chr1:67385951-67385952
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:71 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:67348400-67389000 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
2 chr1:67349400-67389600 Weak transcription Aorta Aorta
3 chr1:67359400-67389600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
4 chr1:67364000-67389000 Weak transcription Osteobl bone
5 chr1:67364800-67388800 Weak transcription NHDF-Ad bronchial
6 chr1:67366600-67389000 Weak transcription Duodenum Smooth Muscle Duodenum
7 chr1:67377200-67389200 Weak transcription H9 Cell Line embryonic stem cell
8 chr1:67379200-67388600 Weak transcription HUES64 Cell Line embryonic stem cell
9 chr1:67380000-67388800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
10 chr1:67380400-67387600 Weak transcription HepG2 liver
11 chr1:67382200-67388800 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
12 chr1:67382200-67389000 Weak transcription Primary T helper cells PMA-I stimulated --
13 chr1:67382200-67389200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
14 chr1:67382400-67389200 Weak transcription Fetal Adrenal Gland Adrenal Gland
15 chr1:67382600-67388800 Weak transcription Brain Anterior Caudate brain
16 chr1:67383000-67389000 Weak transcription Cortex derived primary cultured neurospheres brain
17 chr1:67383200-67388000 Enhancers Rectal Mucosa Donor 31 rectum
18 chr1:67383200-67388800 Weak transcription HUES6 Cell Line embryonic stem cell
19 chr1:67383400-67387600 Weak transcription K562 blood
20 chr1:67383400-67388800 Weak transcription Fetal Brain Male brain
21 chr1:67383400-67389200 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
22 chr1:67383600-67386200 Weak transcription HUES48 Cell Line embryonic stem cell
23 chr1:67383600-67387800 Weak transcription Primary T cells from cord blood blood
24 chr1:67383800-67388200 Weak transcription Fetal Heart heart
25 chr1:67383800-67389000 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
26 chr1:67384000-67389000 Weak transcription Primary T helper cells fromperipheralblood blood
27 chr1:67384200-67386400 Enhancers Sigmoid Colon Sigmoid Colon
28 chr1:67384400-67388800 Weak transcription Brain Cingulate Gyrus brain
29 chr1:67384400-67389200 Weak transcription Primary hematopoietic stem cells blood
30 chr1:67384400-67389600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
31 chr1:67384600-67388600 Weak transcription Brain Angular Gyrus brain
32 chr1:67384600-67388800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
33 chr1:67384600-67389000 Weak transcription Duodenum Mucosa Duodenum
34 chr1:67384800-67389000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
35 chr1:67384800-67389200 Weak transcription Placenta Placenta
36 chr1:67385000-67386600 ZNF genes & repeats hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
37 chr1:67385000-67387600 ZNF genes & repeats hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
38 chr1:67385000-67388800 Weak transcription Primary mononuclear cells fromperipheralblood Blood
39 chr1:67385200-67386400 Strong transcription Brain Germinal Matrix brain
40 chr1:67385200-67386400 Enhancers Colonic Mucosa Colon
41 chr1:67385200-67388000 Weak transcription Skeletal Muscle Female skeletal muscle
42 chr1:67385200-67389200 Weak transcription Fetal Muscle Leg muscle
43 chr1:67385200-67389400 Weak transcription Stomach Smooth Muscle stomach
44 chr1:67385400-67386000 Strong transcription Fetal Stomach stomach
45 chr1:67385400-67386200 ZNF genes & repeats Primary hematopoietic stem cells short term culture blood
46 chr1:67385400-67386200 ZNF genes & repeats Fetal Brain Female brain
47 chr1:67385400-67386400 ZNF genes & repeats Dnd41 blood
48 chr1:67385400-67388800 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
49 chr1:67385400-67388800 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
50 chr1:67385600-67386000 ZNF genes & repeats ES-UCSF4 Cell Line embryonic stem cell

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