The 2.0 version of rSNPBase

Variant report

Variant rs2147838
Chromosome Location chr1:67399466-67399467
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:122 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:67395000-67401400 Active TSS K562 blood
2 chr1:67395400-67400200 Active TSS Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
3 chr1:67395400-67401000 Active TSS A549 lung
4 chr1:67395600-67400000 Active TSS Primary T cells fromperipheralblood blood
5 chr1:67395600-67400000 Active TSS HMEC breast
6 chr1:67395600-67400400 Active TSS NHLF lung
7 chr1:67395600-67400600 Active TSS Hela-S3 cervix
8 chr1:67396600-67416600 Weak transcription Spleen Spleen
9 chr1:67396800-67400000 Weak transcription Left Ventricle heart
10 chr1:67396800-67403000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
11 chr1:67396800-67403000 Weak transcription Gastric stomach
12 chr1:67396800-67411200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
13 chr1:67396800-67414400 Weak transcription Lung lung
14 chr1:67396800-67429800 Weak transcription Pancreas Pancrea
15 chr1:67396800-67458200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
16 chr1:67396800-67459000 Weak transcription Esophagus oesophagus
17 chr1:67397000-67400400 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Male --
18 chr1:67397000-67400600 Flanking Active TSS Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
19 chr1:67397000-67408000 Weak transcription ES-WA7 Cell Line embryonic stem cell
20 chr1:67397000-67409200 Weak transcription Fetal Muscle Trunk muscle
21 chr1:67397200-67400200 Flanking Active TSS Osteobl bone
22 chr1:67397200-67400400 Flanking Active TSS Dnd41 blood
23 chr1:67397600-67399600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
24 chr1:67397600-67399600 Weak transcription Primary mononuclear cells fromperipheralblood Blood
25 chr1:67397600-67399600 Weak transcription Right Atrium heart
26 chr1:67397600-67399800 Enhancers Brain Substantia Nigra brain
27 chr1:67397600-67399800 Enhancers Fetal Heart heart
28 chr1:67397600-67399800 Weak transcription Ovary ovary
29 chr1:67397600-67400000 Enhancers Brain Cingulate Gyrus brain
30 chr1:67397600-67400000 Weak transcription Psoas Muscle Psoas
31 chr1:67397600-67400000 Weak transcription Sigmoid Colon Sigmoid Colon
32 chr1:67397600-67400000 Weak transcription Small Intestine intestine
33 chr1:67397600-67400200 Weak transcription Fetal Muscle Leg muscle
34 chr1:67397600-67400400 Enhancers Brain Inferior Temporal Lobe brain
35 chr1:67397600-67400400 Weak transcription Skeletal Muscle Male skeletal muscle
36 chr1:67397600-67400600 Enhancers Brain Hippocampus Middle brain
37 chr1:67397600-67400600 Enhancers Rectal Smooth Muscle rectum
38 chr1:67397600-67401400 Enhancers Brain Anterior Caudate brain
39 chr1:67397600-67411000 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
40 chr1:67397600-67411200 Weak transcription Placenta Placenta
41 chr1:67397600-67411200 Weak transcription Fetal Stomach stomach
42 chr1:67397600-67413000 Weak transcription Fetal Brain Female brain
43 chr1:67397600-67413000 Weak transcription Fetal Kidney kidney
44 chr1:67397600-67416600 Weak transcription Right Ventricle heart
45 chr1:67397600-67424400 Weak transcription Colonic Mucosa Colon
46 chr1:67397600-67457600 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
47 chr1:67397800-67399600 Enhancers iPS-15b Cell Line embryonic stem cell
48 chr1:67397800-67399800 Weak transcription Primary monocytes fromperipheralblood blood
49 chr1:67397800-67399800 Flanking Active TSS Primary T helper memory cells from peripheral blood 1 blood
50 chr1:67397800-67399800 Weak transcription Primary Natural Killer cells fromperipheralblood blood

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Last update: Aug 31, 2015