The 2.0 version of rSNPBase

Variant report

Variant rs3008852
Chromosome Location chr1:67383416-67383417
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:37 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:67348400-67389000 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
2 chr1:67349400-67389600 Weak transcription Aorta Aorta
3 chr1:67352800-67385600 Weak transcription Ovary ovary
4 chr1:67359400-67389600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
5 chr1:67364000-67385800 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
6 chr1:67364000-67389000 Weak transcription Osteobl bone
7 chr1:67364800-67388800 Weak transcription NHDF-Ad bronchial
8 chr1:67366600-67389000 Weak transcription Duodenum Smooth Muscle Duodenum
9 chr1:67367800-67385400 Weak transcription Fetal Stomach stomach
10 chr1:67369600-67385600 Weak transcription Breast Myoepithelial Primary Cells Breast
11 chr1:67377200-67384800 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
12 chr1:67377200-67389200 Weak transcription H9 Cell Line embryonic stem cell
13 chr1:67379200-67388600 Weak transcription HUES64 Cell Line embryonic stem cell
14 chr1:67380000-67388800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
15 chr1:67380400-67387600 Weak transcription HepG2 liver
16 chr1:67381400-67383600 Weak transcription Primary T helper cells fromperipheralblood blood
17 chr1:67381600-67384200 Weak transcription Sigmoid Colon Sigmoid Colon
18 chr1:67382000-67385400 Enhancers Fetal Intestine Small intestine
19 chr1:67382200-67388800 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
20 chr1:67382200-67389000 Weak transcription Primary T helper cells PMA-I stimulated --
21 chr1:67382200-67389200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
22 chr1:67382400-67385200 Weak transcription Brain Germinal Matrix brain
23 chr1:67382400-67385600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
24 chr1:67382400-67389200 Weak transcription Fetal Adrenal Gland Adrenal Gland
25 chr1:67382600-67385400 Weak transcription Primary hematopoietic stem cells short term culture blood
26 chr1:67382600-67388800 Weak transcription Brain Anterior Caudate brain
27 chr1:67382800-67383800 Enhancers Fetal Intestine Large intestine
28 chr1:67382800-67384000 ZNF genes & repeats hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
29 chr1:67382800-67385800 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
30 chr1:67383000-67385600 Weak transcription Primary B cells from cord blood blood
31 chr1:67383000-67389000 Weak transcription Cortex derived primary cultured neurospheres brain
32 chr1:67383200-67383600 Weak transcription H1 Cell Line embryonic stem cell
33 chr1:67383200-67388000 Enhancers Rectal Mucosa Donor 31 rectum
34 chr1:67383200-67388800 Weak transcription HUES6 Cell Line embryonic stem cell
35 chr1:67383400-67387600 Weak transcription K562 blood
36 chr1:67383400-67388800 Weak transcription Fetal Brain Male brain
37 chr1:67383400-67389200 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin

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Last update: Aug 31, 2015