The 2.0 version of rSNPBase

Variant report

Variant rs2985817
Chromosome Location chr1:67398607-67398608
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:122 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:67395000-67398800 Active TSS Foreskin Keratinocyte Primary Cells skin03 Skin
2 chr1:67395000-67401400 Active TSS K562 blood
3 chr1:67395400-67399000 Active TSS HUES48 Cell Line embryonic stem cell
4 chr1:67395400-67400200 Active TSS Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
5 chr1:67395400-67401000 Active TSS A549 lung
6 chr1:67395600-67399200 Active TSS GM12878-XiMat blood
7 chr1:67395600-67400000 Active TSS Primary T cells fromperipheralblood blood
8 chr1:67395600-67400000 Active TSS HMEC breast
9 chr1:67395600-67400400 Active TSS NHLF lung
10 chr1:67395600-67400600 Active TSS Hela-S3 cervix
11 chr1:67396600-67398800 Active TSS Primary T helper 17 cells PMA-I stimulated --
12 chr1:67396600-67416600 Weak transcription Spleen Spleen
13 chr1:67396800-67400000 Weak transcription Left Ventricle heart
14 chr1:67396800-67403000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
15 chr1:67396800-67403000 Weak transcription Gastric stomach
16 chr1:67396800-67411200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
17 chr1:67396800-67414400 Weak transcription Lung lung
18 chr1:67396800-67429800 Weak transcription Pancreas Pancrea
19 chr1:67396800-67458200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
20 chr1:67396800-67459000 Weak transcription Esophagus oesophagus
21 chr1:67397000-67399000 Flanking Active TSS Primary T helper cells fromperipheralblood blood
22 chr1:67397000-67400400 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Male --
23 chr1:67397000-67400600 Flanking Active TSS Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
24 chr1:67397000-67408000 Weak transcription ES-WA7 Cell Line embryonic stem cell
25 chr1:67397000-67409200 Weak transcription Fetal Muscle Trunk muscle
26 chr1:67397200-67398800 Flanking Active TSS HUVEC blood vessel
27 chr1:67397200-67400200 Flanking Active TSS Osteobl bone
28 chr1:67397200-67400400 Flanking Active TSS Dnd41 blood
29 chr1:67397600-67398800 Weak transcription Aorta Aorta
30 chr1:67397600-67399000 Enhancers Brain Dorsolateral Prefrontal Cortex brain
31 chr1:67397600-67399200 Enhancers Primary T helper naive cells from peripheral blood blood
32 chr1:67397600-67399200 Enhancers Skeletal Muscle Female skeletal muscle
33 chr1:67397600-67399200 Enhancers HSMMtube muscle
34 chr1:67397600-67399400 Enhancers Primary T killer naive cells fromperipheralblood blood
35 chr1:67397600-67399400 Weak transcription Thymus Thymus
36 chr1:67397600-67399600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
37 chr1:67397600-67399600 Weak transcription Primary mononuclear cells fromperipheralblood Blood
38 chr1:67397600-67399600 Weak transcription Right Atrium heart
39 chr1:67397600-67399800 Enhancers Brain Substantia Nigra brain
40 chr1:67397600-67399800 Enhancers Fetal Heart heart
41 chr1:67397600-67399800 Weak transcription Ovary ovary
42 chr1:67397600-67400000 Enhancers Brain Cingulate Gyrus brain
43 chr1:67397600-67400000 Weak transcription Psoas Muscle Psoas
44 chr1:67397600-67400000 Weak transcription Sigmoid Colon Sigmoid Colon
45 chr1:67397600-67400000 Weak transcription Small Intestine intestine
46 chr1:67397600-67400200 Weak transcription Fetal Muscle Leg muscle
47 chr1:67397600-67400400 Enhancers Brain Inferior Temporal Lobe brain
48 chr1:67397600-67400400 Weak transcription Skeletal Muscle Male skeletal muscle
49 chr1:67397600-67400600 Enhancers Brain Hippocampus Middle brain
50 chr1:67397600-67400600 Enhancers Rectal Smooth Muscle rectum

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Last update: Aug 31, 2015