Variant report

Variant	rs4487607
Chromosome Location	chr6:131282853-131282854
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs17059978	1.00[YRI][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6569721	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6906396	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73623828	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7760822	0.86[YRI][hapmap]
rs7769519	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131253000-131302200	Weak transcription	Primary B cells from cord blood	blood
2	chr6:131255400-131288800	Weak transcription	Fetal Kidney	kidney
3	chr6:131260000-131286200	Weak transcription	HSMMtube	muscle
4	chr6:131266000-131283800	Weak transcription	Lung	lung
5	chr6:131266000-131287600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr6:131266800-131287200	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr6:131267000-131286000	Weak transcription	Brain Angular Gyrus	brain
8	chr6:131267000-131294800	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr6:131267400-131286000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr6:131267400-131287200	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr6:131267600-131284000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr6:131267600-131287200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr6:131267800-131286000	Weak transcription	NHDF-Ad	bronchial
14	chr6:131267800-131288200	Weak transcription	NH-A	brain
15	chr6:131268400-131287200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr6:131269000-131290400	Weak transcription	Right Ventricle	heart
17	chr6:131269400-131286000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr6:131272200-131301000	Weak transcription	Placenta	Placenta
19	chr6:131272800-131289000	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr6:131274400-131289000	Weak transcription	Rectal Smooth Muscle	rectum
21	chr6:131275800-131287800	Weak transcription	Fetal Stomach	stomach
22	chr6:131276200-131286000	Weak transcription	Primary hematopoietic stem cells	blood
23	chr6:131276400-131283000	Weak transcription	Adipose Nuclei	Adipose
24	chr6:131276400-131284000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr6:131276400-131286800	Weak transcription	Aorta	Aorta
26	chr6:131276400-131288800	Weak transcription	Rectal Mucosa Donor 29	rectum
27	chr6:131277000-131286000	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr6:131277000-131288600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr6:131277400-131290000	Weak transcription	Fetal Intestine Small	intestine
30	chr6:131277600-131283800	Weak transcription	Psoas Muscle	Psoas
31	chr6:131277600-131284000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr6:131277600-131284000	Weak transcription	Left Ventricle	heart
33	chr6:131277600-131286400	Weak transcription	NHLF	lung
34	chr6:131277600-131287800	Weak transcription	Fetal Muscle Leg	muscle
35	chr6:131277600-131288800	Weak transcription	Fetal Muscle Trunk	muscle
36	chr6:131277800-131287800	Weak transcription	Sigmoid Colon	Sigmoid Colon
37	chr6:131280000-131288200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
38	chr6:131280200-131286000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr6:131280200-131286200	Weak transcription	Osteobl	bone
40	chr6:131280400-131285800	Weak transcription	Muscle Satellite Cultured Cells	--
41	chr6:131280400-131286200	Weak transcription	HSMM	muscle
42	chr6:131281400-131286000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
43	chr6:131281400-131287200	Weak transcription	Ovary	ovary
44	chr6:131281800-131286000	Weak transcription	Brain Anterior Caudate	brain
45	chr6:131281800-131288000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
46	chr6:131282000-131283000	Enhancers	Small Intestine	intestine
47	chr6:131282000-131283800	Weak transcription	Brain Cingulate Gyrus	brain
48	chr6:131282000-131287000	Weak transcription	HepG2	liver
49	chr6:131282000-131287600	Weak transcription	Brain Substantia Nigra	brain
50	chr6:131282200-131283000	Enhancers	Primary B cells from peripheral blood	blood

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