Variant report

Variant	rs7769519
Chromosome Location	chr6:131330525-131330526
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs17059978	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4487607	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6569721	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6906396	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73623828	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032955	chr6:131298803-131818502	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv538443	chr6:131298803-131818502	Active TSS Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131322600-131333200	Weak transcription	Pancreas	Pancrea
2	chr6:131324000-131334200	Weak transcription	Small Intestine	intestine
3	chr6:131326000-131333800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr6:131327000-131331200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr6:131327000-131333200	Weak transcription	Ovary	ovary
6	chr6:131327800-131330600	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
7	chr6:131327800-131331200	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr6:131328400-131332200	Weak transcription	Brain Hippocampus Middle	brain
9	chr6:131328400-131334800	Weak transcription	A549	lung
10	chr6:131329600-131333800	Weak transcription	Brain Angular Gyrus	brain
11	chr6:131329800-131330600	Weak transcription	NHLF	lung
12	chr6:131329800-131331000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr6:131329800-131332000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr6:131329800-131332000	Weak transcription	Brain Cingulate Gyrus	brain
15	chr6:131329800-131332200	Weak transcription	Brain Substantia Nigra	brain
16	chr6:131329800-131333200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
17	chr6:131329800-131334600	Weak transcription	Fetal Stomach	stomach
18	chr6:131329800-131334800	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr6:131329800-131334800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr6:131329800-131336400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr6:131329800-131347400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr6:131330000-131335000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr6:131330000-131335000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr6:131330200-131330600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr6:131330200-131334800	Weak transcription	Fetal Muscle Leg	muscle
26	chr6:131330200-131335400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr6:131330400-131333600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr6:131330400-131336400	Weak transcription	H1 Cell Line	embryonic stem cell

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