Variant report

Variant	rs6906396
Chromosome Location	chr6:131314755-131314756
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:131314347..131316651-chr6:131330693..131332360,2	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs17059978	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4487607	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6569721	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73623828	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7769519	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032955	chr6:131298803-131818502	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv538443	chr6:131298803-131818502	Active TSS Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131298800-131314800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr6:131303800-131315400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:131306800-131315200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr6:131306800-131317000	Weak transcription	Fetal Intestine Small	intestine
5	chr6:131306800-131317200	Weak transcription	NHLF	lung
6	chr6:131306800-131317400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr6:131306800-131320000	Weak transcription	Left Ventricle	heart
8	chr6:131308000-131315400	Weak transcription	Lung	lung
9	chr6:131309200-131317200	Weak transcription	Adipose Nuclei	Adipose
10	chr6:131310400-131316800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr6:131311400-131318400	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr6:131312400-131317000	Weak transcription	Rectal Smooth Muscle	rectum
13	chr6:131312400-131318400	Weak transcription	Fetal Muscle Leg	muscle
14	chr6:131312600-131314800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr6:131312600-131314800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr6:131312600-131317400	Weak transcription	Fetal Stomach	stomach
17	chr6:131312600-131321800	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr6:131313000-131318400	Weak transcription	Fetal Kidney	kidney
19	chr6:131313200-131315400	Enhancers	A549	lung
20	chr6:131313200-131317000	Weak transcription	Brain Hippocampus Middle	brain
21	chr6:131313400-131315600	Enhancers	iPS-20b Cell Line	embryonic stem cell
22	chr6:131313400-131316800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr6:131313600-131315200	Enhancers	HUES6 Cell Line	embryonic stem cell
24	chr6:131313600-131316800	Weak transcription	Fetal Lung	lung
25	chr6:131313600-131316800	Weak transcription	Osteobl	bone
26	chr6:131313600-131317400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr6:131313800-131314800	Enhancers	Fetal Muscle Trunk	muscle
28	chr6:131313800-131315000	Weak transcription	HUES64 Cell Line	embryonic stem cell
29	chr6:131313800-131315800	Enhancers	H9 Cell Line	embryonic stem cell
30	chr6:131313800-131315800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr6:131313800-131316800	Weak transcription	NHEK	skin
32	chr6:131313800-131317600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr6:131314000-131315000	Weak transcription	H1 Cell Line	embryonic stem cell
34	chr6:131314000-131315000	Enhancers	Pancreas	Pancrea
35	chr6:131314000-131315800	Enhancers	ES-I3 Cell Line	embryonic stem cell
36	chr6:131314000-131315800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
37	chr6:131314000-131315800	Enhancers	HUES48 Cell Line	embryonic stem cell
38	chr6:131314000-131315800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
39	chr6:131314000-131315800	Enhancers	HepG2	liver
40	chr6:131314000-131316800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
41	chr6:131314000-131317600	Enhancers	Placenta	Placenta
42	chr6:131314000-131318000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr6:131314400-131315000	Enhancers	Dnd41	blood
44	chr6:131314400-131315800	Enhancers	iPS-15b Cell Line	embryonic stem cell
45	chr6:131314400-131317400	Weak transcription	HSMM	muscle
46	chr6:131314400-131318000	Weak transcription	Brain Inferior Temporal Lobe	brain
47	chr6:131314600-131314800	Enhancers	Right Atrium	heart
48	chr6:131314600-131315200	Enhancers	Duodenum Mucosa	Duodenum
49	chr6:131314600-131315400	Enhancers	K562	blood
50	chr6:131314600-131315600	Enhancers	Small Intestine	intestine

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