Variant report

Variant	rs4496775
Chromosome Location	chr6:63362485-63362486
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 103 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:83)

rs_ID	r²[population]
rs1856123	0.81[AMR][1000 genomes]
rs2145317	0.81[AMR][1000 genomes]
rs2180708	0.81[AMR][1000 genomes]
rs2752999	0.81[AMR][1000 genomes]
rs2753015	0.81[AMR][1000 genomes]
rs2753016	0.81[AMR][1000 genomes]
rs2753017	0.81[AMR][1000 genomes]
rs2753018	0.81[AMR][1000 genomes]
rs2753021	0.81[AMR][1000 genomes]
rs2753022	0.81[AMR][1000 genomes]
rs2753023	0.81[AMR][1000 genomes]
rs2753024	0.81[AMR][1000 genomes]
rs2753027	0.81[AMR][1000 genomes]
rs2753034	0.81[AMR][1000 genomes]
rs2753035	0.81[AMR][1000 genomes]
rs2753036	0.81[AMR][1000 genomes]
rs2753037	0.81[AMR][1000 genomes]
rs2753038	0.81[AMR][1000 genomes]
rs2753040	0.81[AMR][1000 genomes]
rs2786207	0.81[AMR][1000 genomes]
rs2786208	0.81[AMR][1000 genomes]
rs2786212	0.81[AMR][1000 genomes]
rs2843037	0.81[AFR][1000 genomes]
rs2843092	0.81[AMR][1000 genomes]
rs2843093	0.81[AMR][1000 genomes]
rs2843094	0.81[AMR][1000 genomes]
rs2843124	0.81[AFR][1000 genomes]
rs36086878	0.81[AMR][1000 genomes]
rs4330524	0.89[AFR][1000 genomes]
rs4395706	0.83[AFR][1000 genomes]
rs4407697	0.84[AFR][1000 genomes]
rs4422597	0.82[AFR][1000 genomes]
rs4501409	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4577772	0.83[AFR][1000 genomes]
rs4618502	0.83[AFR][1000 genomes]
rs4710364	0.83[AFR][1000 genomes]
rs6453669	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6903488	0.81[AMR][1000 genomes]
rs6903547	0.81[AMR][1000 genomes]
rs6908342	0.81[AMR][1000 genomes]
rs6912705	0.81[AMR][1000 genomes]
rs6918509	0.81[AMR][1000 genomes]
rs6923059	0.81[AMR][1000 genomes]
rs6927290	0.81[AMR][1000 genomes]
rs6928483	0.81[AMR][1000 genomes]
rs6935062	0.81[AMR][1000 genomes]
rs6936086	0.80[AFR][1000 genomes]
rs6938635	0.81[AMR][1000 genomes]
rs6938996	0.81[AMR][1000 genomes]
rs6941418	0.83[AFR][1000 genomes]
rs73493565	0.81[AMR][1000 genomes]
rs73493571	0.81[AMR][1000 genomes]
rs73493573	0.81[AMR][1000 genomes]
rs73493576	0.81[AMR][1000 genomes]
rs73759617	0.81[AMR][1000 genomes]
rs7747153	0.81[AMR][1000 genomes]
rs9293968	0.81[AMR][1000 genomes]
rs9341416	0.83[AFR][1000 genomes]
rs9351989	0.81[AFR][1000 genomes]
rs9443043	0.81[AMR][1000 genomes]
rs9443044	0.81[AMR][1000 genomes]
rs9443046	0.81[AMR][1000 genomes]
rs9443050	0.81[AMR][1000 genomes]
rs9443051	0.81[AMR][1000 genomes]
rs9443052	0.81[AMR][1000 genomes]
rs9443055	0.81[AMR][1000 genomes]
rs9447203	0.81[AMR][1000 genomes]
rs9447204	0.81[AMR][1000 genomes]
rs9447213	0.81[AMR][1000 genomes]
rs9447216	0.81[AMR][1000 genomes]
rs9447218	0.81[AMR][1000 genomes]
rs9447230	0.81[AMR][1000 genomes]
rs9447234	0.81[AMR][1000 genomes]
rs9447235	0.81[AMR][1000 genomes]
rs9447243	0.81[AMR][1000 genomes]
rs9447249	0.81[AMR][1000 genomes]
rs9447250	0.81[AMR][1000 genomes]
rs9447251	0.81[AMR][1000 genomes]
rs9447253	0.81[AMR][1000 genomes]
rs9447256	0.81[AMR][1000 genomes]
rs9447257	0.81[AMR][1000 genomes]
rs9447258	0.81[AMR][1000 genomes]
rs9447260	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:20 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532025	chr6:62944349-63571677	Enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1029503	chr6:63033365-63698355	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv532026	chr6:63085396-63698477	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv917014	chr6:63085410-63698365	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv885967	chr6:63152724-63605221	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv885968	chr6:63199731-63585140	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv885969	chr6:63223191-63496191	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv885970	chr6:63241352-63496191	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
9	nsv885971	chr6:63241352-63605221	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
10	nsv885972	chr6:63241352-63615339	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
11	nsv885973	chr6:63241352-63630759	Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
12	nsv885974	chr6:63241352-63672200	ZNF genes & repeats Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
13	nsv1031787	chr6:63273240-63370651	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
14	nsv1019831	chr6:63279677-64230736	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
15	nsv603352	chr6:63286366-63596112	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
16	nsv885975	chr6:63309588-63585140	Active TSS Enhancers ZNF genes & repeats Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
17	nsv885976	chr6:63330596-63496191	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
18	nsv885977	chr6:63330596-63592881	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
19	nsv885978	chr6:63330596-63605221	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
20	nsv981328	chr6:63349116-63365618	ZNF genes & repeats Active TSS Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:63359000-63363600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr6:63361400-63363600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
3	chr6:63361600-63363200	ZNF genes & repeats	Liver	Liver
4	chr6:63361600-63363800	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
5	chr6:63362000-63364200	ZNF genes & repeats	Adipose Nuclei	Adipose

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