Variant report
| Variant | rs4505164 |
|---|---|
| Chromosome Location | chr13:29574648-29574649 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:31)
| rs_ID | r2[population] |
|---|---|
| rs3899580 | 1.00[AMR][1000 genomes] |
| rs3899581 | 1.00[AMR][1000 genomes] |
| rs3899582 | 1.00[AMR][1000 genomes] |
| rs3899583 | 1.00[AMR][1000 genomes] |
| rs4258467 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs4277206 | 1.00[AMR][1000 genomes] |
| rs4354784 | 1.00[AMR][1000 genomes] |
| rs4474549 | 1.00[AMR][1000 genomes] |
| rs4511378 | 1.00[AMR][1000 genomes] |
| rs4517629 | 1.00[AMR][1000 genomes] |
| rs4544098 | 1.00[AMR][1000 genomes] |
| rs5004133 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs57956091 | 1.00[AMR][1000 genomes] |
| rs74041691 | 0.91[AFR][1000 genomes] |
| rs74041702 | 1.00[AMR][1000 genomes] |
| rs74045503 | 1.00[AMR][1000 genomes] |
| rs74045504 | 1.00[AMR][1000 genomes] |
| rs74045505 | 1.00[AMR][1000 genomes] |
| rs74045506 | 1.00[AMR][1000 genomes] |
| rs74045507 | 1.00[AMR][1000 genomes] |
| rs74045509 | 1.00[AMR][1000 genomes] |
| rs74045510 | 1.00[AMR][1000 genomes] |
| rs74045511 | 1.00[AMR][1000 genomes] |
| rs74045512 | 1.00[AMR][1000 genomes] |
| rs74045514 | 1.00[AMR][1000 genomes] |
| rs74045515 | 1.00[AMR][1000 genomes] |
| rs74045517 | 1.00[AMR][1000 genomes] |
| rs9670420 | 1.00[AMR][1000 genomes] |
| rs9671063 | 1.00[AMR][1000 genomes] |
| rs9671078 | 1.00[AMR][1000 genomes] |
| rs9706684 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv533835 | chr13:29141132-29962069 | Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 28 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr13:29574400-29575600 | Enhancers | Fetal Heart | heart |
