Variant report

Variant	rs4517629
Chromosome Location	chr13:29576572-29576573
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SLC46A3-4	chr13:29575315-29577832	NONHSAT032711
2	lnc-SLC46A3-4	chr13:29575364-29577832	ucscGeneNc_uc001usr_1

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs3899580	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3899581	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3899582	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3899583	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4258467	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4277206	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4354784	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4474549	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4505164	1.00[AMR][1000 genomes]
rs4511378	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4544098	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs5004133	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57956091	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74041685	0.93[AFR][1000 genomes]
rs74041686	0.93[AFR][1000 genomes]
rs74041687	0.93[AFR][1000 genomes]
rs74041688	0.93[AFR][1000 genomes]
rs74041689	0.93[AFR][1000 genomes]
rs74041691	0.85[AFR][1000 genomes]
rs74041692	0.93[AFR][1000 genomes]
rs74041693	0.93[AFR][1000 genomes]
rs74041694	0.93[AFR][1000 genomes]
rs74041702	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74045503	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74045504	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74045505	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74045506	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74045507	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74045509	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74045510	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74045511	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74045512	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74045514	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74045515	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74045517	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9670420	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9671063	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9671078	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9706684	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533835	chr13:29141132-29962069	Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:29575200-29579200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr13:29575800-29577800	Weak transcription	Left Ventricle	heart
3	chr13:29576200-29580200	Enhancers	Fetal Heart	heart
4	chr13:29576400-29577400	Weak transcription	Aorta	Aorta

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