Variant report

Variant	rs74041688
Chromosome Location	chr13:29566435-29566436
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs3899580	0.93[AFR][1000 genomes]
rs3899581	0.93[AFR][1000 genomes]
rs3899582	0.93[AFR][1000 genomes]
rs3899583	0.86[AFR][1000 genomes]
rs4258467	0.81[AFR][1000 genomes]
rs4277206	0.93[AFR][1000 genomes]
rs4354784	0.93[AFR][1000 genomes]
rs4474549	0.93[AFR][1000 genomes]
rs4511378	0.93[AFR][1000 genomes]
rs4517629	0.93[AFR][1000 genomes]
rs4544098	0.93[AFR][1000 genomes]
rs5004133	0.81[AFR][1000 genomes]
rs57956091	1.00[AFR][1000 genomes]
rs74041685	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74041686	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74041687	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74041689	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74041691	0.85[AFR][1000 genomes]
rs74041692	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74041693	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74041694	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74041702	0.93[AFR][1000 genomes]
rs74045503	0.93[AFR][1000 genomes]
rs74045504	0.93[AFR][1000 genomes]
rs74045505	0.93[AFR][1000 genomes]
rs74045506	0.93[AFR][1000 genomes]
rs74045507	0.93[AFR][1000 genomes]
rs74045509	0.93[AFR][1000 genomes]
rs74045510	0.93[AFR][1000 genomes]
rs74045511	0.86[AFR][1000 genomes]
rs74045512	0.93[AFR][1000 genomes]
rs74045514	0.86[AFR][1000 genomes]
rs74045515	0.89[AFR][1000 genomes]
rs74045517	0.89[AFR][1000 genomes]
rs9670420	0.93[AFR][1000 genomes]
rs9671063	0.93[AFR][1000 genomes]
rs9671078	0.93[AFR][1000 genomes]
rs9706684	0.93[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533835	chr13:29141132-29962069	Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:29565000-29566800	Enhancers	Fetal Heart	heart
2	chr13:29565800-29566600	Enhancers	Liver	Liver
3	chr13:29566000-29566600	Enhancers	Pancreas	Pancrea
4	chr13:29566200-29566600	Enhancers	Dnd41	blood
5	chr13:29566200-29566800	Enhancers	Aorta	Aorta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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